Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH17_RS10810 Genome accession   NZ_CP034030
Coordinates   1815244..1815672 (+) Length   142 a.a.
NCBI ID   WP_050154588.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1810244..1820672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH17_RS10775 (EGH17_10775) metG 1810748..1812802 (+) 2055 WP_050154644.1 methionine--tRNA ligase -
  EGH17_RS10780 (EGH17_10780) - 1812877..1813185 (-) 309 Protein_1848 NAD(P)-dependent oxidoreductase -
  EGH17_RS10785 (EGH17_10785) - 1813138..1813665 (+) 528 WP_229690230.1 pilin -
  EGH17_RS10790 (EGH17_10790) - 1813718..1814074 (+) 357 Protein_1850 pilin -
  EGH17_RS14470 (EGH17_10795) - 1814093..1814439 (+) 347 Protein_1851 pilin -
  EGH17_RS14475 (EGH17_10800) - 1814479..1814843 (+) 365 Protein_1852 pilin -
  EGH17_RS10810 (EGH17_10810) pilE 1815244..1815672 (+) 429 WP_050154588.1 pilin Machinery gene
  EGH17_RS10815 (EGH17_10815) thiC 1816160..1818061 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  EGH17_RS10830 (EGH17_10830) - 1818659..1819534 (+) 876 WP_003686971.1 NUDIX domain-containing protein -
  EGH17_RS10835 (EGH17_10835) - 1819543..1820484 (+) 942 WP_003686969.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15102.86 Da        Isoelectric Point: 9.0315

>NTDB_id=328405 EGH17_RS10810 WP_050154588.1 1815244..1815672(+) (pilE) [Neisseria gonorrhoeae strain FQ02]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGKWPADNGAAGVASSDKIKGKYVQKVEVAKGVVTAQMASTGVNKEIQ
GKKLSLWAKRQAGSVKWFCGQPVTRNDAKDDTVTAAAGNGGKNNAIDTKHLPSTCRDEHDAT

Nucleotide


Download         Length: 429 bp        

>NTDB_id=328405 EGH17_RS10810 WP_050154588.1 1815244..1815672(+) (pilE) [Neisseria gonorrhoeae strain FQ02]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCAAATGGCCCGCCGACAACGGCGCTGCCGGCGTGGCATCCTCCGACAAAATCAAAGGCA
AATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAACGA
CGCCAAAGACGACACCGTCACCGCCGCCGCCGGCAACGGCGGCAAAAACAACGCCATCGACACCAAGCACCTGCCGTCAA
CCTGCCGCGATGAACATGATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75.524

100

0.761
  pilE Neisseria gonorrhoeae MS11

67.143

98.592

0.662

Multiple sequence alignment