Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH18_RS12510 Genome accession   NZ_CP034028
Coordinates   2104376..2104675 (-) Length   99 a.a.
NCBI ID   WP_124693336.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099376..2109675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH18_RS13670 - 2099828..2099977 (-) 150 WP_153707856.1 hypothetical protein -
  EGH18_RS12460 (EGH18_12460) - 2099991..2100702 (-) 712 Protein_2133 opacity family porin -
  EGH18_RS12470 (EGH18_12470) pilE 2101365..2101865 (-) 501 WP_124693335.1 pilin Machinery gene
  EGH18_RS14535 (EGH18_12490) - 2102680..2102786 (-) 107 Protein_2135 pilin -
  EGH18_RS12500 (EGH18_12500) lpxC 2102914..2103837 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EGH18_RS12510 (EGH18_12510) pilE 2104376..2104675 (-) 300 WP_124693336.1 pilin Machinery gene
  EGH18_RS12515 (EGH18_12515) - 2104732..2105106 (-) 375 Protein_2138 pilin -
  EGH18_RS12525 (EGH18_12525) - 2105549..2105899 (-) 351 Protein_2139 pilin -
  EGH18_RS12530 (EGH18_12530) - 2105926..2106276 (-) 351 Protein_2140 pilin -
  EGH18_RS14540 (EGH18_12535) - 2106303..2106953 (-) 651 WP_082298951.1 pilin -
  EGH18_RS12540 (EGH18_12540) - 2107069..2107441 (-) 373 Protein_2142 pilin -
  EGH18_RS12550 (EGH18_12550) - 2107576..2107922 (-) 347 Protein_2143 pilin -
  EGH18_RS12555 (EGH18_12555) - 2107943..2108302 (-) 360 Protein_2144 pilin -
  EGH18_RS12570 (EGH18_12570) - 2109101..2109226 (+) 126 Protein_2145 IS110 family transposase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10646.05 Da        Isoelectric Point: 9.9903

>NTDB_id=328363 EGH18_RS12510 WP_124693336.1 2104376..2104675(-) (pilE) [Neisseria gonorrhoeae strain FQ04]
MASPPSDIKGKYVKSVTVAKGVVTAEMKSDGVNKEIQGKRLSLWARREDGSVKWFCGRPVTRANVADPNDAVAAANDKDK
EIDTKHLPSTCRDTSSAGK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=328363 EGH18_RS12510 WP_124693336.1 2104376..2104675(-) (pilE) [Neisseria gonorrhoeae strain FQ04]
GTGGCATCCCCCCCCTCCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCGAAAT
GAAATCAGACGGCGTAAACAAAGAAATCCAAGGCAAAAGACTCTCCCTGTGGGCCAGGCGTGAAGACGGTTCGGTAAAAT
GGTTCTGCGGACGGCCGGTTACGCGCGCCAACGTTGCCGACCCCAACGACGCCGTTGCCGCCGCCAACGACAAAGACAAA
GAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGACACTTCATCTGCCGGTAAGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

69.697

100

0.697
  pilE Neisseria gonorrhoeae strain FA1090

71.739

92.929

0.667

Multiple sequence alignment