Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH20_RS12565 Genome accession   NZ_CP034026
Coordinates   2118148..2118570 (-) Length   140 a.a.
NCBI ID   WP_165865035.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2113148..2123570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH20_RS12510 (EGH20_12510) - 2113657..2114050 (-) 394 Protein_2132 pilin -
  EGH20_RS12515 (EGH20_12515) - 2114421..2114564 (-) 144 WP_010361012.1 hypothetical protein -
  EGH20_RS14405 (EGH20_12525) - 2114669..2114776 (-) 108 Protein_2134 pilin -
  EGH20_RS12530 (EGH20_12530) pilE 2114899..2115312 (-) 414 WP_165865034.1 pilin Machinery gene
  EGH20_RS12540 (EGH20_12540) lpxC 2115418..2116341 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EGH20_RS12545 (EGH20_12545) - 2116843..2117229 (-) 387 Protein_2137 pilin -
  EGH20_RS12555 (EGH20_12555) - 2117497..2117880 (-) 384 Protein_2138 pilin -
  EGH20_RS12565 (EGH20_12565) pilE 2118148..2118570 (-) 423 WP_165865035.1 pilin Machinery gene
  EGH20_RS12570 (EGH20_12570) - 2118709..2119068 (-) 360 Protein_2140 pilin -
  EGH20_RS12575 (EGH20_12575) pilE 2119146..2119559 (-) 414 WP_017146667.1 pilin Machinery gene
  EGH20_RS14410 (EGH20_12590) - 2120072..2120437 (-) 366 Protein_2142 pilin -
  EGH20_RS12595 (EGH20_12595) - 2120477..2120878 (-) 402 Protein_2143 pilin -
  EGH20_RS12605 (EGH20_12605) - 2121185..2121634 (-) 450 Protein_2144 pilin -
  EGH20_RS12610 (EGH20_12610) - 2121728..2122110 (-) 383 Protein_2145 pilin -
  EGH20_RS12615 (EGH20_12615) - 2122101..2122511 (-) 411 Protein_2146 pilin -
  EGH20_RS14415 (EGH20_12625) - 2123038..2123412 (-) 375 Protein_2147 pilin -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15141.71 Da        Isoelectric Point: 5.7723

>NTDB_id=328312 EGH20_RS12565 WP_165865035.1 2118148..2118570(-) (pilE) [Neisseria gonorrhoeae strain FQ20]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPSDNSAAGVASSPSDIKGKYVKSVTVTNGVVTAEMKSDGVNKEI
QDKRLSLWARRQDGSVKWFCGQPVTRADAAKDDTVTAANDGKEIDTKHLPSTCRDESNAT

Nucleotide


Download         Length: 423 bp        

>NTDB_id=328312 EGH20_RS12565 WP_165865035.1 2118148..2118570(-) (pilE) [Neisseria gonorrhoeae strain FQ20]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAATATTACCTGAATCACGGCAAATGGCCATCCGACAATAGTGCCGCCGGCGTGGCATCCTCCCCCTCCGACATCAAAG
GCAAATATGTTAAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCGAAATGAAATCAGACGGCGTAAACAAAGAAATC
CAAGACAAAAGACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGC
CGACGCCGCCAAAGACGACACCGTCACCGCCGCCAACGACGGCAAAGAAATCGACACCAAGCACCTGCCGTCAACCTGCC
GCGATGAATCAAATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

71.631

100

0.721
  pilE Neisseria gonorrhoeae MS11

71.942

99.286

0.714

Multiple sequence alignment