Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   FO444_RS06100 Genome accession   NZ_CP041759
Coordinates   1180210..1181445 (+) Length   411 a.a.
NCBI ID   WP_012897750.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain IMAU11823     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1175210..1186445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO444_RS06075 (FO444_06075) - 1176045..1176638 (+) 594 WP_029343871.1 xanthine phosphoribosyltransferase -
  FO444_RS06080 (FO444_06080) - 1176687..1177991 (+) 1305 WP_003132095.1 nucleobase:cation symporter-2 family protein -
  FO444_RS06085 (FO444_06085) - 1178020..1178433 (-) 414 WP_038601095.1 hypothetical protein -
  FO444_RS06090 (FO444_06090) - 1178553..1179062 (-) 510 WP_038601092.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  FO444_RS06095 (FO444_06095) - 1179460..1179966 (+) 507 WP_010905786.1 dihydrofolate reductase -
  FO444_RS06100 (FO444_06105) clpX 1180210..1181445 (+) 1236 WP_012897750.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  FO444_RS06105 (FO444_06110) yihA 1181442..1182029 (+) 588 WP_010905788.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  FO444_RS06110 (FO444_06115) folB 1182083..1182433 (+) 351 WP_038601086.1 dihydroneopterin aldolase -
  FO444_RS06115 (FO444_06120) folE 1182513..1183562 (+) 1050 WP_211752528.1 GTP cyclohydrolase I FolE -
  FO444_RS06120 (FO444_06125) folP 1183559..1184632 (+) 1074 WP_240733662.1 dihydropteroate synthase -
  FO444_RS06125 (FO444_06130) - 1184635..1185132 (+) 498 WP_058205661.1 NUDIX domain-containing protein -
  FO444_RS06130 (FO444_06135) - 1185151..1186434 (+) 1284 WP_098403307.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46024.89 Da        Isoelectric Point: 4.6053

>NTDB_id=328311 FO444_RS06100 WP_012897750.1 1180210..1181445(+) (clpX) [Lactococcus lactis subsp. lactis strain IMAU11823]
MSNTQNPNIHCSFCGKSQDDVKKMIAGSDVYICNECIELSTRILEEELREEQDSEMLEVKTPKEMFDHLNEYVIGQEKAK
RALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILL
KLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNI
LFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLTEEDLIQILT
EPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKA
EPQMIREAKKK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=328311 FO444_RS06100 WP_012897750.1 1180210..1181445(+) (clpX) [Lactococcus lactis subsp. lactis strain IMAU11823]
ATGTCAAATACACAAAATCCAAATATACATTGTTCTTTCTGCGGAAAGAGTCAAGATGATGTAAAAAAAATGATTGCCGG
TTCAGACGTTTATATTTGTAATGAATGTATTGAACTTTCAACTCGAATCTTAGAAGAAGAATTAAGAGAAGAACAAGATT
CAGAAATGCTTGAAGTTAAAACACCTAAAGAAATGTTTGACCATTTAAATGAGTACGTGATAGGTCAAGAAAAAGCCAAA
CGTGCACTTGCAGTTGCCGTTTATAATCATTACAAACGAATTAATTTTACAGCAAGTAAAATTGCTGAAGATATCGAACT
ACAAAAATCAAATATTCTATTAATCGGACCTACCGGTTCTGGTAAGACTTTTCTCGCTCAAACTTTAGCGAAATCACTCA
ATGTTCCGTTTGCGATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTTGGAGAAGACGTTGAAAATATTCTTTTA
AAACTTTTACAAGCGAGTGATTTCAATATTGAACGTGCTGAACGTGGAATTATCTATATCGATGAAATTGATAAAATTGC
TAAAAAATCTGAAAATGTATCAATTACTCGTGACGTTTCCGGGGAAGGTGTTCAACAAGCCCTTTTGAAAATTATTGAAG
GGACAGTAGCTAGTGTTCCACCACAAGGTGGACGTAAACATCCTAATCAAGAAATGATTCAAATTGATACCAAAAATATC
TTATTTATTGTTGGTGGAGCTTTTGACGGGATTGAAGAAATTGTCAAACAACGTTTAGGTGAAAAAATTATTGGTTTTGG
TGCCAATAATAAAAAATTAAATGACGATGACTCTTATATGCAAGAAATTATTGCCGAGGACATTCAAAAATTTGGATTAA
TCCCTGAATTTATTGGTCGTCTACCAATTGTTGCTGCTTTGGAACGTCTGACCGAAGAGGATTTGATTCAAATTTTGACA
GAACCTAAAAACGCTTTGATTAAACAATATAAACAACTCCTTTTATTTGATAATGTTGAACTTGAATTTGAAGATGAAGC
CCTCATGGCAATTGCTAGAAAAGCAATTGAGCGCAAAACAGGAGCGCGTGGACTTCGTTCAATTATTGAAGAAGTAATGA
TGGATATCATGTTTGAAGTTCCAAGTCATGAAGAAATTACCAAAGTTATTATTAATGAAGCAGTTGTTGACGGAAAAGCT
GAGCCACAAATGATTCGAGAGGCCAAGAAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(108-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(10-46)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(310-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

76.808

97.567

0.749
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.883

95.864

0.564

Multiple sequence alignment