Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH14_RS12550 Genome accession   NZ_CP034024
Coordinates   2117680..2118102 (-) Length   140 a.a.
NCBI ID   WP_165865035.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2112680..2123102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH14_RS12500 (EGH14_12500) - 2113095..2113585 (-) 491 Protein_2136 pilin -
  EGH14_RS12505 (EGH14_12505) - 2113956..2114099 (-) 144 WP_010361012.1 hypothetical protein -
  EGH14_RS14405 (EGH14_12515) - 2114204..2114311 (-) 108 Protein_2138 pilin -
  EGH14_RS12520 (EGH14_12520) pilE 2114434..2114847 (-) 414 WP_165865034.1 pilin Machinery gene
  EGH14_RS12530 (EGH14_12530) lpxC 2114953..2115876 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EGH14_RS12535 (EGH14_12535) - 2116378..2116764 (-) 387 Protein_2141 pilin -
  EGH14_RS12545 (EGH14_12545) - 2117032..2117412 (-) 381 Protein_2142 pilin -
  EGH14_RS12550 (EGH14_12550) pilE 2117680..2118102 (-) 423 WP_165865035.1 pilin Machinery gene
  EGH14_RS12555 (EGH14_12555) - 2118241..2118600 (-) 360 Protein_2144 pilin -
  EGH14_RS12560 (EGH14_12560) - 2118712..2119086 (-) 375 Protein_2145 pilin -
  EGH14_RS14410 (EGH14_12575) - 2119638..2120003 (-) 366 Protein_2146 pilin -
  EGH14_RS12580 (EGH14_12580) - 2120043..2120444 (-) 402 Protein_2147 pilin -
  EGH14_RS12590 (EGH14_12590) - 2120751..2121200 (-) 450 Protein_2148 pilin -
  EGH14_RS12595 (EGH14_12595) - 2121294..2121676 (-) 383 Protein_2149 pilin -
  EGH14_RS12600 (EGH14_12600) - 2121667..2122077 (-) 411 Protein_2150 pilin -
  EGH14_RS14415 (EGH14_12610) - 2122604..2122978 (-) 375 Protein_2151 pilin -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15141.71 Da        Isoelectric Point: 5.7723

>NTDB_id=328262 EGH14_RS12550 WP_165865035.1 2117680..2118102(-) (pilE) [Neisseria gonorrhoeae strain FQ35]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPSDNSAAGVASSPSDIKGKYVKSVTVTNGVVTAEMKSDGVNKEI
QDKRLSLWARRQDGSVKWFCGQPVTRADAAKDDTVTAANDGKEIDTKHLPSTCRDESNAT

Nucleotide


Download         Length: 423 bp        

>NTDB_id=328262 EGH14_RS12550 WP_165865035.1 2117680..2118102(-) (pilE) [Neisseria gonorrhoeae strain FQ35]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAATATTACCTGAATCACGGCAAATGGCCATCCGACAATAGTGCCGCCGGCGTGGCATCCTCCCCCTCCGACATCAAAG
GCAAATATGTTAAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCGAAATGAAATCAGACGGCGTAAACAAAGAAATC
CAAGACAAAAGACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGC
CGACGCCGCCAAAGACGACACCGTCACCGCCGCCAACGACGGCAAAGAAATCGACACCAAGCACCTGCCGTCAACCTGCC
GCGATGAATCAAATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

71.631

100

0.721
  pilE Neisseria gonorrhoeae MS11

71.942

99.286

0.714

Multiple sequence alignment