Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH14_RS12520 Genome accession   NZ_CP034024
Coordinates   2114434..2114847 (-) Length   137 a.a.
NCBI ID   WP_165865034.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2109434..2119847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH14_RS12485 (EGH14_12485) pilA 2110347..2111600 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  EGH14_RS13680 - 2111636..2111854 (-) 219 WP_165865052.1 hypothetical protein -
  EGH14_RS12490 (EGH14_12490) - 2111868..2112688 (-) 821 Protein_2135 opacity family porin -
  EGH14_RS12500 (EGH14_12500) - 2113095..2113585 (-) 491 Protein_2136 pilin -
  EGH14_RS12505 (EGH14_12505) - 2113956..2114099 (-) 144 WP_010361012.1 hypothetical protein -
  EGH14_RS14405 (EGH14_12515) - 2114204..2114311 (-) 108 Protein_2138 pilin -
  EGH14_RS12520 (EGH14_12520) pilE 2114434..2114847 (-) 414 WP_165865034.1 pilin Machinery gene
  EGH14_RS12530 (EGH14_12530) lpxC 2114953..2115876 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EGH14_RS12535 (EGH14_12535) - 2116378..2116764 (-) 387 Protein_2141 pilin -
  EGH14_RS12545 (EGH14_12545) - 2117032..2117412 (-) 381 Protein_2142 pilin -
  EGH14_RS12550 (EGH14_12550) pilE 2117680..2118102 (-) 423 WP_165865035.1 pilin Machinery gene
  EGH14_RS12555 (EGH14_12555) - 2118241..2118600 (-) 360 Protein_2144 pilin -
  EGH14_RS12560 (EGH14_12560) - 2118712..2119086 (-) 375 Protein_2145 pilin -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14900.64 Da        Isoelectric Point: 7.8483

>NTDB_id=328261 EGH14_RS12520 WP_165865034.1 2114434..2114847(-) (pilE) [Neisseria gonorrhoeae strain FQ35]
MPTDPDSRLRGNDEAILLVEGQKSAVTEYYLNHGKWPENNDSAGVASSSSIKGKYVKEVEVAKGVVTATMKSDGVNKEIK
GKKLSLWARRQDGSVKWFCGQPVTRTDDAKDDVTAATTGKIETKHLPSTCRDESNAT

Nucleotide


Download         Length: 414 bp        

>NTDB_id=328261 EGH14_RS12520 WP_165865034.1 2114434..2114847(-) (pilE) [Neisseria gonorrhoeae strain FQ35]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGTCGAAGGTCAAAAATCAGCCGTTAC
CGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGACTCTGCCGGCGTGGCATCTTCTTCATCAATCAAAGGCA
AATATGTTAAGGAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCACCGA
CGACGCCAAAGACGACGTTACCGCCGCCACCACCGGCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAAT
CAAATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.464

100

0.73
  pilE Neisseria gonorrhoeae MS11

72.464

100

0.73

Multiple sequence alignment