Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   EGH13_RS02765 Genome accession   NZ_CP034022
Coordinates   451546..452019 (+) Length   157 a.a.
NCBI ID   WP_205844625.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ36     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446546..457019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH13_RS02735 (EGH13_02735) dnaB 446994..448400 (+) 1407 WP_003690896.1 replicative DNA helicase -
  EGH13_RS02745 (EGH13_02745) pilH 448708..449373 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH13_RS02750 (EGH13_02750) pilV 449405..450013 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  EGH13_RS02755 (EGH13_02755) pilJ 450010..450954 (+) 945 WP_047916984.1 PilW family protein Machinery gene
  EGH13_RS02760 (EGH13_02760) pilK 450933..451544 (+) 612 WP_003687918.1 pilus assembly protein Machinery gene
  EGH13_RS02765 (EGH13_02765) pilL 451546..452019 (+) 474 WP_205844625.1 PilX family type IV pilin Machinery gene
  EGH13_RS02770 (EGH13_02770) - 452089..452397 (-) 309 WP_010951048.1 AzlD family protein -
  EGH13_RS13350 - 452394..453101 (-) 708 Protein_455 AzlC family ABC transporter permease -
  EGH13_RS02780 (EGH13_02780) dut 453267..453719 (+) 453 WP_047918679.1 dUTP diphosphatase -
  EGH13_RS02785 (EGH13_02785) dapC 453795..454982 (+) 1188 WP_047918680.1 succinyldiaminopimelate transaminase -
  EGH13_RS02790 (EGH13_02790) yaaA 455293..456072 (+) 780 WP_047918681.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17583.42 Da        Isoelectric Point: 9.5863

>NTDB_id=328185 EGH13_RS02765 WP_205844625.1 451546..452019(+) (pilL) [Neisseria gonorrhoeae strain FQ36]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKRFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQVYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=328185 EGH13_RS02765 WP_205844625.1 451546..452019(+) (pilL) [Neisseria gonorrhoeae strain FQ36]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
GGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGTCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

99.363

100

0.994
  pilX Neisseria meningitidis 8013

85.35

100

0.854

Multiple sequence alignment