Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   EGH13_RS02760 Genome accession   NZ_CP034022
Coordinates   450933..451544 (+) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ36     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445933..456544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH13_RS02725 (EGH13_02725) - 446250..446831 (-) 582 WP_047918049.1 superoxide dismutase -
  EGH13_RS02735 (EGH13_02735) dnaB 446994..448400 (+) 1407 WP_003690896.1 replicative DNA helicase -
  EGH13_RS02745 (EGH13_02745) pilH 448708..449373 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH13_RS02750 (EGH13_02750) pilV 449405..450013 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  EGH13_RS02755 (EGH13_02755) pilJ 450010..450954 (+) 945 WP_047916984.1 PilW family protein Machinery gene
  EGH13_RS02760 (EGH13_02760) pilK 450933..451544 (+) 612 WP_003687918.1 pilus assembly protein Machinery gene
  EGH13_RS02765 (EGH13_02765) pilL 451546..452019 (+) 474 WP_205844625.1 PilX family type IV pilin Machinery gene
  EGH13_RS02770 (EGH13_02770) - 452089..452397 (-) 309 WP_010951048.1 AzlD family protein -
  EGH13_RS13350 - 452394..453101 (-) 708 Protein_455 AzlC family ABC transporter permease -
  EGH13_RS02780 (EGH13_02780) dut 453267..453719 (+) 453 WP_047918679.1 dUTP diphosphatase -
  EGH13_RS02785 (EGH13_02785) dapC 453795..454982 (+) 1188 WP_047918680.1 succinyldiaminopimelate transaminase -
  EGH13_RS02790 (EGH13_02790) yaaA 455293..456072 (+) 780 WP_047918681.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=328184 EGH13_RS02760 WP_003687918.1 450933..451544(+) (pilK) [Neisseria gonorrhoeae strain FQ36]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=328184 EGH13_RS02760 WP_003687918.1 450933..451544(+) (pilK) [Neisseria gonorrhoeae strain FQ36]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment