Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   FGF55_RS18365 Genome accession   NZ_CP041691
Coordinates   3698635..3698754 (+) Length   39 a.a.
NCBI ID   WP_021494790.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3693635..3703754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS18345 (FGF55_18345) narK 3693794..3694984 (-) 1191 WP_007407632.1 nitrate transporter NarK -
  FGF55_RS18350 (FGF55_18350) argS 3695119..3696789 (-) 1671 WP_014419127.1 arginine--tRNA ligase -
  FGF55_RS18355 (FGF55_18355) - 3696786..3697214 (-) 429 WP_014419128.1 DUF1934 family protein -
  FGF55_RS18360 (FGF55_18360) rapF 3697506..3698651 (+) 1146 WP_014419129.1 tetratricopeptide repeat protein Regulator
  FGF55_RS18365 (FGF55_18365) phrF 3698635..3698754 (+) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  FGF55_RS18370 (FGF55_18370) - 3698952..3699155 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  FGF55_RS18375 (FGF55_18375) - 3699169..3699372 (+) 204 WP_007407641.1 hypothetical protein -
  FGF55_RS18380 (FGF55_18380) - 3699407..3699592 (+) 186 WP_014419130.1 DUF4177 domain-containing protein -
  FGF55_RS18385 (FGF55_18385) - 3699779..3700060 (+) 282 WP_014419131.1 hypothetical protein -
  FGF55_RS18390 (FGF55_18390) - 3700104..3700616 (+) 513 WP_014419132.1 stage II sporulation protein M -
  FGF55_RS18400 (FGF55_18400) - 3701207..3701425 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  FGF55_RS18405 (FGF55_18405) speB 3701594..3702466 (-) 873 WP_007614448.1 agmatinase -
  FGF55_RS18410 (FGF55_18410) speE 3702525..3703355 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4266.10 Da        Isoelectric Point: 8.0195

>NTDB_id=328116 FGF55_RS18365 WP_021494790.1 3698635..3698754(+) (phrF) [Bacillus amyloliquefaciens strain ZJU1]
MKLKYKLALTCLAIGTIFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=328116 FGF55_RS18365 WP_021494790.1 3698635..3698754(+) (phrF) [Bacillus amyloliquefaciens strain ZJU1]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTAGCGATAGGCACTATTTTTGTTTCAGCCGACATTGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterProScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487
  phrF Bacillus subtilis subsp. subtilis str. 168

66.667

69.231

0.462