Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH15_RS12505 Genome accession   NZ_CP034016
Coordinates   2104274..2104573 (-) Length   99 a.a.
NCBI ID   WP_115306942.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ84     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099274..2109573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH15_RS13660 - 2099748..2099897 (-) 150 WP_153707856.1 hypothetical protein -
  EGH15_RS12455 (EGH15_12455) - 2099911..2100708 (-) 798 WP_124693298.1 opacity family porin -
  EGH15_RS12465 (EGH15_12465) pilE 2101254..2101763 (-) 510 WP_124693311.1 pilin Machinery gene
  EGH15_RS14530 (EGH15_12485) - 2102578..2102684 (-) 107 Protein_2133 pilin -
  EGH15_RS12495 (EGH15_12495) lpxC 2102812..2103735 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EGH15_RS12505 (EGH15_12505) pilE 2104274..2104573 (-) 300 WP_115306942.1 pilin Machinery gene
  EGH15_RS12510 (EGH15_12510) - 2104630..2105004 (-) 375 Protein_2136 pilin -
  EGH15_RS12520 (EGH15_12520) - 2105447..2105797 (-) 351 Protein_2137 pilin -
  EGH15_RS12525 (EGH15_12525) - 2105824..2106174 (-) 351 Protein_2138 pilin -
  EGH15_RS14535 (EGH15_12530) - 2106201..2106851 (-) 651 WP_082298951.1 pilin -
  EGH15_RS12535 (EGH15_12535) - 2106967..2107339 (-) 373 Protein_2140 pilin -
  EGH15_RS12545 (EGH15_12545) - 2107474..2107820 (-) 347 Protein_2141 pilin -
  EGH15_RS12550 (EGH15_12550) - 2107841..2108200 (-) 360 Protein_2142 pilin -
  EGH15_RS12565 (EGH15_12565) - 2108999..2109124 (+) 126 Protein_2143 IS110 family transposase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10618.08 Da        Isoelectric Point: 10.1380

>NTDB_id=328070 EGH15_RS12505 WP_115306942.1 2104274..2104573(-) (pilE) [Neisseria gonorrhoeae strain FQ84]
MASPPSDIKGKYVKSVTVAKGVVTAEMKSDGVNKEIKGKKLSLWARREDGSVKWFCGRPVTRANVADPNDAVAAANDKDK
EIDTKHLPSTCRDTSSAGK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=328070 EGH15_RS12505 WP_115306942.1 2104274..2104573(-) (pilE) [Neisseria gonorrhoeae strain FQ84]
GTGGCATCCCCCCCCTCCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCGAAAT
GAAATCAGACGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGACGGTTCGGTAAAAT
GGTTCTGCGGACGGCCGGTTACGCGCGCCAACGTTGCCGACCCCAACGACGCCGTTGCCGCCGCCAACGACAAAGACAAA
GAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGACACTTCATCTGCCGGTAAGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.717

100

0.717
  pilE Neisseria gonorrhoeae strain FA1090

71.739

92.929

0.667

Multiple sequence alignment