Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH15_RS12465 Genome accession   NZ_CP034016
Coordinates   2101254..2101763 (-) Length   169 a.a.
NCBI ID   WP_124693311.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ84     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2096254..2106763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH15_RS12440 (EGH15_12440) msrAB 2096678..2098246 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  EGH15_RS12450 (EGH15_12450) pilA 2098392..2099645 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  EGH15_RS13660 - 2099748..2099897 (-) 150 WP_153707856.1 hypothetical protein -
  EGH15_RS12455 (EGH15_12455) - 2099911..2100708 (-) 798 WP_124693298.1 opacity family porin -
  EGH15_RS12465 (EGH15_12465) pilE 2101254..2101763 (-) 510 WP_124693311.1 pilin Machinery gene
  EGH15_RS14530 (EGH15_12485) - 2102578..2102684 (-) 107 Protein_2133 pilin -
  EGH15_RS12495 (EGH15_12495) lpxC 2102812..2103735 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EGH15_RS12505 (EGH15_12505) pilE 2104274..2104573 (-) 300 WP_115306942.1 pilin Machinery gene
  EGH15_RS12510 (EGH15_12510) - 2104630..2105004 (-) 375 Protein_2136 pilin -
  EGH15_RS12520 (EGH15_12520) - 2105447..2105797 (-) 351 Protein_2137 pilin -
  EGH15_RS12525 (EGH15_12525) - 2105824..2106174 (-) 351 Protein_2138 pilin -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18236.59 Da        Isoelectric Point: 8.4463

>NTDB_id=328069 EGH15_RS12465 WP_124693311.1 2101254..2101763(-) (pilE) [Neisseria gonorrhoeae strain FQ84]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYPNNGKWPADNGAAGVASSSSIK
GKYVKEVKVENGVVTATMNSSNVNKEIKDKRLSLWAKRENGSVKWFCGRPVTRANADADNDDVAKAGNDNEKINTKHLPS
TCRDNFDAS

Nucleotide


Download         Length: 510 bp        

>NTDB_id=328069 EGH15_RS12465 WP_124693311.1 2101254..2101763(-) (pilE) [Neisseria gonorrhoeae strain FQ84]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCAGCATACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCCGAATAACGGCAAATGGCCCGCCGACAACGGCGCTGCCGGCGTGGCATCTTCTTCATCAATCAAA
GGCAAATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCACAATGAATTCAAGCAACGTAAACAAAGAAAT
CAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACGGCCGGTTACGCGCG
CCAACGCCGACGCCGACAACGACGACGTCGCCAAAGCCGGCAACGACAACGAAAAAATCAACACCAAGCACCTGCCGTCA
ACCTGCCGCGATAACTTTGATGCCAGCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

80

97.633

0.781
  pilE Neisseria gonorrhoeae strain FA1090

75.74

100

0.757

Multiple sequence alignment