Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   VV7356_RS05590 Genome accession   NZ_CP041683
Coordinates   1172654..1174684 (+) Length   676 a.a.
NCBI ID   WP_026130803.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1167654..1179684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS05565 (VV7356_05620) rsxC 1168059..1170584 (-) 2526 WP_017790693.1 electron transport complex subunit RsxC -
  VV7356_RS05570 (VV7356_05625) rsxB 1170597..1171193 (-) 597 WP_011080896.1 electron transport complex subunit RsxB -
  VV7356_RS05575 (VV7356_05630) rsxA 1171195..1171773 (-) 579 WP_017428869.1 electron transport complex subunit RsxA -
  VV7356_RS05585 (VV7356_05640) - 1172371..1172559 (+) 189 WP_017428870.1 hypothetical protein -
  VV7356_RS05590 (VV7356_05645) uvrB 1172654..1174684 (+) 2031 WP_026130803.1 excinuclease ABC subunit UvrB Machinery gene
  VV7356_RS05595 (VV7356_05650) luxO 1174992..1176392 (+) 1401 WP_017790691.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VV7356_RS05600 (VV7356_05655) luxU 1176392..1176739 (+) 348 WP_017790690.1 quorum-sensing phosphorelay protein LuxU -
  VV7356_RS05605 (VV7356_05660) - 1176840..1177730 (-) 891 WP_017790689.1 YvcK family protein -
  VV7356_RS05610 (VV7356_05665) moaA 1178045..1179034 (+) 990 WP_017790688.1 GTP 3',8-cyclase MoaA -
  VV7356_RS05615 (VV7356_05670) moaB 1179113..1179625 (+) 513 WP_017428876.1 molybdenum cofactor biosynthesis protein B -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77119.93 Da        Isoelectric Point: 5.1429

>NTDB_id=327901 VV7356_RS05590 WP_026130803.1 1172654..1174684(+) (uvrB) [Vibrio vulnificus strain 7356]
MSKLYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLH
IRRGDVMDQRDILRRLAELQYSRNDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLP
RFTIYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGTMYKGDRSRKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPVLEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHQHDVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADSITK
SMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDITKSRKQKVSKTVPLSKVAEPSLSYNVLTPQQLEKEIT
KLEAQMYKHAQNLEFELAAQKRDEIEKLRQQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=327901 VV7356_RS05590 WP_026130803.1 1172654..1174684(+) (uvrB) [Vibrio vulnificus strain 7356]
ATGAGCAAACTTTACGATCTGGTTTCTGACTATGCGCCATCGGGAGATCAACCAACGGCGATCAAACAACTGACAGAAGG
GTTGGATGCTGGTTTGGCTCACCAAACCTTACTCGGAGTGACGGGATCCGGTAAAACATTTACCTTGGCGAATGTGATTG
CTCAAGCGCAACGTCCTGCAATTCTACTTGCGCCAAACAAAACCCTTGCCGCCCAACTTTACGGTGAGATGAAAGCGTTT
TTCCCAAATAACGCGGTCGAATATTTTGTCTCTTACTACGATTATTACCAACCTGAAGCCTATGTGCCAACCACTGACAC
TTTTATAGAGAAGGACTCATCGGTCAACGCACATATCGAGCAAATGCGTTTATCTGCCACCAAAGCGTTATTGGAGCGAA
AAGACGCCATTATCGTCGCCTCTGTTTCGGCTATTTATGGTTTGGGTGATCCCGAAGCTTACCTGCAAATGATGCTGCAT
ATACGCCGTGGTGATGTGATGGATCAACGCGACATACTGCGCCGTTTGGCTGAGTTGCAATACAGTCGTAACGATATTGC
TTTTGAACGAGGCCAATTTCGCGTGCGCGGAGAGGTCATCGACGTTTTTCCGGCTGAGTCGGACCAAGATGCGGTACGCA
TCGAGATGTTTGATGATGAGATCGACTGCATCAGTGTGTTTGACCCACTGACCGGAGTGGTCAAACAACGCGATTTACCC
CGCTTCACCATTTACCCTAAGACTCACTACGTCACGCCACGAGAGCGTATTCTGCAGGCGATTGAAAACATCAAGCAAGA
GCTGCGTGAGCGACAAACTTACTTGCGTGACAATAATAAATTGTTGGAAGAGCAACGTATTAGTCAACGTACCCAGTTCG
ATATTGAAATGATGAATGAGCTGGGATTCTGCTCTGGCATCGAAAACTACTCGCGTTACCTCAGCGGTCGAGCGGAAGGT
GAGCCGCCTCCAACATTATTTGACTACTTACCGCACGATGGTTTGCTGATCATCGATGAATCTCACGTGACCGTGCCACA
AATTGGCACAATGTATAAAGGTGACCGCTCACGGAAGGAGACCTTGGTTGAATATGGTTTCCGTTTGCCTTCAGCATTGG
ACAATCGACCATTGAAATTTGAAGAGTTCGAAGCGCTTGCGCCACAAACTATTTTCGTTTCAGCCACCCCGGGCAATTAC
GAGCTAGAGAAAAGTGCGGGCGAAATTGCTGACCAAGTGGTGCGTCCGACTGGTCTGCTCGATCCTGTACTGGAAGTGCG
ACCAGTGGCGACTCAAGTGGATGATCTGCTTTCTGAGATCCGCATTCGCGCAGTGAAAGATGAACGGGTGTTAGTGACAA
CACTGACCAAACGTATGGCGGAAGATCTCACTGAATACTTGCACCAGCACGATGTGAAAGTGCGTTACTTACACTCTGAT
ATCGACACGGTTGAACGAGTGGAGATCATTCGTGACTTGAGGCTAGGGGAGTTCGATGTGTTGGTGGGGATTAACTTGTT
ACGCGAGGGTCTCGACATGCCTGAAGTGTCTTTGGTTGCGATTCTCGATGCCGACAAAGAAGGCTTTTTACGTTCAGAGC
GCTCATTGATTCAGACCATTGGCCGCGCAGCCCGTAACCTCCATGGTAAAGCGATCTTGTATGCAGATTCCATCACCAAA
TCGATGAAGAAAGCGATGGATGAAACGGAACGACGCCGTGAGAAACAGCAAGCGTACAATGAAAAAATGGGCATTCAGCC
TCAAGCCTTGAAGCGCAATATCAAAGATATTATGGAGCTGGGCGATATTACGAAATCCCGCAAGCAGAAAGTGAGCAAAA
CGGTACCATTGTCGAAAGTGGCTGAACCATCGCTGTCCTATAATGTGTTGACACCACAGCAATTGGAAAAAGAAATCACA
AAACTGGAAGCGCAAATGTACAAACACGCTCAGAATTTGGAATTTGAGTTGGCCGCGCAGAAGCGTGATGAAATTGAAAA
GTTGCGTCAGCAGTTTATCGCTAACAGCTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(159-250)

Type III restriction enzyme, res subunit (ResIII)

(16-138)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB/uvrC motif (UVR)

(636-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.146

97.485

0.547
  uvrB Streptococcus pneumoniae R6

56.146

97.485

0.547
  uvrB Streptococcus pneumoniae D39

56.146

97.485

0.547