Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VV7356_RS02625 Genome accession   NZ_CP041683
Coordinates   562174..562899 (-) Length   241 a.a.
NCBI ID   WP_011078574.1    Uniprot ID   A0A3Q0L243
Organism   Vibrio vulnificus strain 7356     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 557174..567899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS02600 (VV7356_02660) sltY 557206..559161 (+) 1956 WP_017789384.1 murein transglycosylase -
  VV7356_RS02605 (VV7356_02665) trpR 559177..559485 (+) 309 WP_017789383.1 trp operon repressor -
  VV7356_RS02610 (VV7356_02670) yjjX 559515..560051 (-) 537 WP_039508084.1 inosine/xanthosine triphosphatase -
  VV7356_RS02615 (VV7356_02675) pheA 560076..561254 (-) 1179 WP_017789381.1 prephenate dehydratase -
  VV7356_RS02620 (VV7356_02680) hpf 561498..561821 (-) 324 WP_011078575.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  VV7356_RS02625 (VV7356_02685) comL 562174..562899 (-) 726 WP_011078574.1 outer membrane protein assembly factor BamD Machinery gene
  VV7356_RS02630 (VV7356_02690) rluD 563036..564013 (+) 978 WP_017789380.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VV7356_RS02635 (VV7356_02695) pgeF 564017..564733 (+) 717 WP_170861647.1 peptidoglycan editing factor PgeF -
  VV7356_RS02640 (VV7356_02700) clpC 564851..567424 (+) 2574 WP_017789378.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27786.57 Da        Isoelectric Point: 5.6928

>NTDB_id=327889 VV7356_RS02625 WP_011078574.1 562174..562899(-) (comL) [Vibrio vulnificus strain 7356]
MKHHTLAGLLAVSVLFGCSSSEQIVPDVPPAELYAEAQTSLQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRSDRDPEPVKQAFDDFKKLLERYPNSPYAED
SQKRMFALKNRLAEYDLATADYYLRREAWIAAINRSQELQKTYPDTIAARKSLKIQLEAYKQLGLQDAIARTEELIRLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=327889 VV7356_RS02625 WP_011078574.1 562174..562899(-) (comL) [Vibrio vulnificus strain 7356]
ATGAAACACCATACTTTAGCAGGCCTGCTCGCGGTATCAGTGTTGTTTGGCTGTTCAAGCAGTGAACAAATTGTGCCGGA
TGTGCCACCAGCAGAGCTGTATGCAGAAGCACAAACCTCTCTTCAAGGAGGAAACTGGCTCACCGCGATTGAGAAACTAG
AAGCGCTAGATTCCCGCTACCCTTTTGGTGCTTACTCAGAACAAGTACAACTTGATTTGATTTACGCCTATTACAAGAAC
GATGATTTGGCTTTGGGTTTAGCGACTATCTCGCGTTTTACGCGTTTAAATCCAACACATGAGAAAATGGATTGGGTGTT
GTACATGCGTGGTCTCACGCACATGGCACAAGATCGTAACTTCATGCATGACTTGTTTAACATTGATCGTAGCGATCGCG
ATCCTGAGCCAGTAAAGCAAGCTTTTGATGATTTCAAAAAACTGCTTGAGCGCTACCCAAACAGCCCATATGCGGAAGAT
TCGCAAAAGCGCATGTTTGCTCTAAAAAACCGTTTAGCAGAATATGACCTAGCAACCGCTGATTATTATTTGCGTCGCGA
AGCTTGGATTGCAGCCATCAACCGTTCTCAGGAGTTGCAGAAAACCTATCCAGATACCATCGCTGCGAGAAAATCACTCA
AAATCCAGCTTGAGGCGTATAAACAATTAGGTTTACAAGATGCCATCGCACGCACCGAAGAGTTGATACGTCTAAATCCG
CTCTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L243

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.585

0.394
  comL Neisseria gonorrhoeae MS11

39.167

99.585

0.39