Detailed information NTG0327890

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VV7356_RS02640
• Genome accession: NZ_CP041683
• Coordinates: 564851..567424 (+)
• Length: 857 a.a.
• NCBI ID: WP_017789378.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 7356
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 559851..572424

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VV7356_RS02615 (VV7356_02675)	pheA	560076..561254 (-)	1179	WP_017789381.1	prephenate dehydratase	-
VV7356_RS02620 (VV7356_02680)	hpf	561498..561821 (-)	324	WP_011078575.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
VV7356_RS02625 (VV7356_02685)	comL	562174..562899 (-)	726	WP_011078574.1	outer membrane protein assembly factor BamD	Machinery gene
VV7356_RS02630 (VV7356_02690)	rluD	563036..564013 (+)	978	WP_017789380.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
VV7356_RS02635 (VV7356_02695)	pgeF	564017..564733 (+)	717	WP_170861647.1	peptidoglycan editing factor PgeF	-
VV7356_RS02640 (VV7356_02700)	clpC	564851..567424 (+)	2574	WP_017789378.1	ATP-dependent chaperone ClpB	Regulator

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 96042.94 Da
• Isoelectric Point: 5.2921

>NTDB_id=327890 VV7356_RS02640 WP_017789378.1 564851..567424(+) (clpC) [Vibrio vulnificus strain 7356]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTILNVDVTHLRSKLSEMLDRLPKVSGIGGD
VQLSSAMGAMFNLCDKIAQKRQDAYISSEIFLLAAIEDRGPLGQLFKELGLTEQKVSQAIEQIRGGQKVNDQNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELSKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLRSLNEELNEKEREFAELEEIWNAEKAALSGTQHIKAALE
QARMDMEFARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQKEAVEVVSNAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLATFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLATRMEEHGYQLEVSDKAL
DLIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSVLPDKKIQLIVNNDQIVAHQ

Nucleotide

• Length: 2574 bp

>NTDB_id=327890 VV7356_RS02640 WP_017789378.1 564851..567424(+) (clpC) [Vibrio vulnificus strain 7356]
ATGCGTCTTGATCGATTTACCAGCAAATTTCAAATCGCTATCTCTGATGCACAATCATTGGCGTTAGGGCGCGATCATCA
ATACATTGAACCTGTTCACTTAATGGTGGCGCTGCTTGATCAAAATGGCAGTCCTATTCGTCCACTGTTGACCATCTTAA
ATGTAGATGTCACCCACCTACGTTCAAAACTCAGCGAAATGCTGGATCGCTTACCCAAAGTGAGCGGTATTGGTGGTGAT
GTACAGCTCTCCTCGGCCATGGGCGCGATGTTTAACCTGTGCGATAAGATTGCACAAAAACGCCAAGATGCTTACATCTC
ATCTGAAATCTTTTTGCTCGCAGCAATCGAAGATAGAGGGCCACTTGGTCAACTCTTCAAAGAACTTGGCTTAACCGAAC
AAAAAGTGAGTCAAGCTATCGAGCAAATTCGCGGTGGTCAAAAAGTGAATGATCAAAATGCGGAAGAACTTCGCCAAGCG
TTAGAGAAATTTACCATTGATCTGACGGAACGCGCAGAGCAGGGCAAACTTGACCCTGTGATTGGTCGTGACGATGAAAT
TCGTCGCACCATCCAAGTATTGCAGCGTCGTACCAAAAACAACCCCGTGATCATTGGTGAACCCGGTGTCGGTAAAACCG
CCATCGTTGAAGGCTTAGCGCAACGCATCATCAATAACGAGGTTCCTGAAGGTTTGCGTGGTCGCCGAGTATTGTCACTC
GATATGGGCGCTTTGGTGGCTGGAGCGAAGTACCGTGGTGAGTTTGAAGAGCGACTTAAATCCGTATTGAATGAGCTCTC
TAAAGAAGAAGGCAATATCATCCTATTTATTGATGAGCTTCATACCATGGTTGGCGCAGGTAAAGGTGAAGGTTCGATGG
ATGCCGGCAATATGCTCAAGCCCGCACTGGCACGTGGTGAGTTACATTGTGTGGGCGCAACGACACTCGATGAGTATCGG
CAGTATATCGAGAAAGATCCGGCTCTTGAGCGCCGCTTCCAAAAAGTGCTGGTGGATGAGCCAACAGTGGAAGACACCAT
TGCGATTTTACGTGGTTTAAAAGAACGCTATGAGCTGCACCATCACGTTGAAATTACCGATCCAGCGATCGTTGCTGCGG
CCAGTTTGTCGCATCGCTATGTTTCTGATCGTCAATTACCGGATAAAGCGATCGATCTTATCGACGAAGCAGCATCCAGT
ATTCGTATGCAGATCGATTCTAAACCCGAAGCTCTGGATAAGTTGGAGCGCAAAATCATCCAACTTAAGATAGAGCAACA
GGCGCTGAGTAATGAACACGATGAAGCAAGTGAAAAGCGTCTGCGCTCACTCAACGAAGAGTTGAATGAGAAAGAGCGTG
AGTTTGCTGAGTTAGAGGAAATTTGGAACGCGGAAAAAGCTGCTTTATCTGGCACTCAGCATATTAAAGCAGCGTTAGAG
CAAGCGCGTATGGATATGGAGTTTGCAAGACGAGCGGGGGATCTTAGCCGCATGTCTGAGCTTCAATATGGCCGTATTCC
AGAGCTTGAGAAGCAACTTGACCTAGCAACGCAAGCGGAAATGCAGGAAATGACCTTGTTGAAAAACAAAGTCACCGATA
ATGAAATTGCGGAAGTGCTTTCAAAGCAAACGGGTATCCCTGTCTCCAAAATGCTTGAAGCAGAAAAAGAAAAGCTGCTT
CGCATGGAAGAGGTGCTACATAAACGTGTCATTGGGCAGAAAGAGGCGGTGGAAGTGGTCTCTAATGCGATACGCCGAAG
CCGAGCAGGCTTATCTGATCCCAATAAACCGATTGGTTCCTTCTTATTCTTAGGTCCCACCGGCGTGGGGAAAACGGAAC
TGTGCAAGACATTGGCGACCTTCATGTTCGACAGTGAGGATGCCATGGTGCGTATCGACATGTCCGAGTTTATGGAGAAA
CACTCAGTGGCACGCTTAGTCGGTGCGCCTCCAGGCTATGTGGGTTATGAAGAAGGTGGTTACTTAACGGAAGCCGTTCG
ACGTAAGCCTTATTCAGTAATTTTGCTCGACGAAGTGGAAAAGGCGCATCCTGATGTGTTCAACATCCTGCTGCAAGTCT
TGGATGATGGTCGATTGACGGATGGACAAGGTAGAACAGTGGATTTCCGCAATACCGTGGTTATCATGACATCAAACCTA
GGCTCCAGCCGCATCCAAGAAAACTTCGCTATGTTGGATTACCAAGGCATCAAAGAACAGGTAATGGAAGTGGTAACCAA
GCACTTTAGGCCGGAGTTTTTGAACCGTGTTGATGAGACTGTTGTCTTCCACCCACTAGGCCAAGACCACATTAAGTCGA
TCGCTGCGATTCAACTTAACCGCTTGGCGACTCGCATGGAAGAGCATGGCTATCAATTGGAAGTGTCCGATAAAGCGCTC
GACTTGATCGCGCAAGTTGGTTTTGACCCGGTTTACGGAGCAAGACCATTGAAACGAGCGATTCAGCAAAGTATTGAAAA
CCCGCTGGCGAAATCTATTTTGGCGGGCTCGGTGCTACCGGATAAGAAAATACAGCTTATCGTCAATAATGACCAAATTG
TGGCACACCAATAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

• AAA lid domain (AAA_lid_9) (342-444)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.713	100	0.473
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.637	99.767	0.415
clpE	Streptococcus mutans UA159	47.865	79.23	0.379
clpE	Streptococcus pneumoniae D39	47.858	78.996	0.378
clpE	Streptococcus pneumoniae Rx1	47.858	78.996	0.378
clpE	Streptococcus pneumoniae R6	47.858	78.996	0.378
clpC	Lactococcus lactis subsp. cremoris KW2	46.009	80.397	0.37