Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   VV7356_RS00710 Genome accession   NZ_CP041683
Coordinates   147621..149702 (-) Length   693 a.a.
NCBI ID   WP_017789541.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 142621..154702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS00690 (VV7356_00695) greB 143082..143564 (+) 483 WP_011149222.1 transcription elongation factor GreB -
  VV7356_RS00695 (VV7356_00700) ompR 143765..144484 (+) 720 WP_011078925.1 two-component system response regulator OmpR -
  VV7356_RS00700 (VV7356_00705) envZ 144578..145876 (+) 1299 WP_011149224.1 two-component system sensor histidine kinase EnvZ -
  VV7356_RS00705 (VV7356_00710) - 145959..147365 (-) 1407 WP_017789542.1 uracil-xanthine permease family protein -
  VV7356_RS00710 (VV7356_00715) recG 147621..149702 (-) 2082 WP_017789541.1 ATP-dependent DNA helicase RecG Machinery gene
  VV7356_RS00715 (VV7356_00720) trmH 149934..150620 (-) 687 WP_011149227.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  VV7356_RS00720 (VV7356_00725) spoT 150708..152828 (-) 2121 WP_017789540.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  VV7356_RS00725 (VV7356_00730) rpoZ 152863..153135 (-) 273 WP_011078919.1 DNA-directed RNA polymerase subunit omega -
  VV7356_RS00730 (VV7356_00735) gmk 153263..153886 (-) 624 WP_011078918.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76799.90 Da        Isoelectric Point: 7.5952

>NTDB_id=327883 VV7356_RS00710 WP_017789541.1 147621..149702(-) (recG) [Vibrio vulnificus strain 7356]
MSAQLLSAVPLTSLSGVGAKVAEKLEKIGLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGHVMQVDTLFGKRKM
LTVKLSDGNGTITLRFFNFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTDQALALLDKAAVQELLPAGLYDQQLTMGQALHIIHRPSPEINLELFDEGKHPAQVRLIMEELLAQNLSMLAVR
SKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDLQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKAKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHACL
NEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRAARYIHHNYPQNAAAIIERWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=327883 VV7356_RS00710 WP_017789541.1 147621..149702(-) (recG) [Vibrio vulnificus strain 7356]
ATGTCTGCCCAACTGTTATCTGCTGTCCCCCTCACGTCCCTCAGTGGGGTCGGTGCTAAGGTGGCTGAAAAGCTGGAGAA
AATTGGCCTAAGCAGCGTGCAAGACCTGCTGTTTCACTTGCCACTTCGTTACGAAGACCGTACCCGCATCTACCCGATTG
CCAAATTGCATGCTGGATTGTGGGCCGCTGTGCAGGGCCATGTGATGCAAGTGGATACCTTGTTTGGTAAACGCAAGATG
TTAACGGTAAAACTCAGCGACGGGAATGGCACCATCACGCTGCGTTTTTTCAACTTTACCGCGGCAATGAAAAACAATTT
TGCCGAGGGTAAGTTAGTACACGCTTACGGCGAAATTAAGCGCGGTAATATGGGGCTGGAGATCGTTCACCCAGACTACA
AGTTTTTCGCCCCAACGCAGAAGCCCGATGTGGAACAAAGCTTAACGCCTGTTTATCCTACCACCGATGGCTTAAGGCAA
ATCACGCTGCGTAACCTCACAGACCAAGCCCTCGCCCTGCTCGATAAAGCCGCGGTTCAAGAGTTACTGCCTGCCGGGTT
GTATGACCAACAACTGACCATGGGGCAAGCGCTGCACATTATCCATCGTCCTTCGCCGGAGATTAATCTGGAACTGTTCG
ACGAAGGGAAGCACCCTGCCCAAGTTCGCTTAATTATGGAAGAGTTGCTGGCTCAGAACTTATCCATGCTCGCCGTGCGC
AGCAAAGGTCAGCAAGATGTCGCGCTGCCACTTCCCCCCGTCCACCAGCTTAAACAACAGCTGTTAGCCCAACTGCCTTT
TTCACCGACCAATGCCCAAGCGCGAGTGGTGCAAGAGATTGAAGAAGATTTGCAAAAAGCGCATCCGATGATGCGTTTGG
TGCAAGGGGATGTCGGCTCGGGTAAAACCTTAGTGGCAGCCTTGGCCGCGGTACGCGCTATCGAACATGGCTACCAAGTG
GCGCTGATGGCGCCCACCGAATTGCTGGCCGAGCAGCACGCGATCAACTTCGCCAATTGGTTTGAAAAAATGGGCATTCC
CGTTGGCTGGCTCGCAGGCAAGCTCAAAGGTAAAGCCAAAGAAGCCGAATTAGCCCGCATTGCCAGTGGCGAAGCGAAAA
TGGTGGTCGGGACACATGCGCTGTTCCAAGAACACGTGGTGTTTGACCATCTTGCTCTTGTGATCATTGATGAACAGCAC
CGCTTTGGCGTGCATCAACGCTTGGAACTGCGCGAAAAAGGCGCCAAACAAGGCGCTTACCCACATCAACTGATCATGAC
TGCTACTCCGATCCCTCGCACATTGGCCATGACCGCTTATGCCGATTTGGAAACATCGGTGATCGACGAGTTACCGCCGG
GACGAACCCCTATCCAAACCGTCGCGATTCCCGACACCAAACGCGAGGACATTGTCGAGCGCATTCGTCATGCCTGCCTC
AATGAGGGTAAGCAGGCGTATTGGGTCTGTACCCTGATTGATGAATCGGAAGTATTGGAAGCCCAAGCGGCAGCAGAAAC
TGCCGAAGAGCTGCAACGTAAATTGCCTGATGTGCGCATTGGTTTGGTGCATGGCCGAATGAAACCGGCTGAAAAACAAG
CGGTGATGCAAGCGTTCAAAAACAATGAATTGCATCTTTTGGTGGCCACCACAGTGATCGAAGTCGGGGTCGATGTGCCC
AACGCCAGCTTGATGATCATCGAAAACCCCGAGCGCTTGGGTCTCGCACAATTGCACCAGTTGCGCGGTCGCGTGGGTCG
AGGCTCAGTAGCAAGCCACTGCGTATTGCTCTATCACGCTCCGCTGTCCAAAACGGCGCAAAAGCGCCTCTCGGTGCTGC
GCGAAAGTAACGATGGTTTCGTCATTGCTCAGCGCGATCTTGAGATCCGCGGGCCAGGTGAGCTGCTCGGCACCAAACAA
ACTGGCCTGGCGGATTTCAAAATTGCCGATCTCGTCCGCGACCAGCGCCTTATCCCCGAAGTTCAACGCGCCGCACGCTA
CATTCACCACAATTACCCACAAAATGCCGCCGCGATTATTGAACGCTGGTTGGGCGAGCGTGATATTTATTCTAAGGCGT
GA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(271-433)

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.256

96.97

0.478
  recG/mmsA Streptococcus pneumoniae R6

40.089

96.825

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40.089

96.825

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

38.565

96.537

0.372