Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FNW97_RS11060 Genome accession   NZ_CP041627
Coordinates   2162136..2162792 (-) Length   218 a.a.
NCBI ID   WP_000611338.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC6     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2157136..2167792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNW97_RS11020 (FNW97_11020) - 2157647..2157907 (+) 261 WP_000488107.1 ogr/Delta-like zinc finger family protein -
  FNW97_RS11025 (FNW97_11025) - 2158097..2158237 (+) 141 WP_000078920.1 Hok/Gef family protein -
  FNW97_RS11030 (FNW97_11030) - 2158427..2158708 (-) 282 WP_071595684.1 hypothetical protein -
  FNW97_RS11050 (FNW97_11050) pgsA 2159702..2160250 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FNW97_RS11055 (FNW97_11055) uvrC 2160307..2162139 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  FNW97_RS11060 (FNW97_11060) letA 2162136..2162792 (-) 657 WP_000611338.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  FNW97_RS24620 (FNW97_11065) - 2162934..2163050 (+) 117 WP_001302039.1 hypothetical protein -
  FNW97_RS11070 (FNW97_11070) yecU 2163088..2163264 (+) 177 WP_001302050.1 protein YecU -
  FNW97_RS11075 (FNW97_11075) yecF 2163251..2163475 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  FNW97_RS11080 (FNW97_11080) sdiA 2163543..2164265 (-) 723 WP_001154273.1 transcriptional regulator SdiA -
  FNW97_RS11085 (FNW97_11085) tcyN 2164495..2165247 (-) 753 WP_047603369.1 L-cystine ABC transporter ATP-binding protein TcyN -
  FNW97_RS11090 (FNW97_11090) tcyL 2165244..2165912 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  FNW97_RS11095 (FNW97_11095) dcyD 2165927..2166913 (-) 987 WP_001128219.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23908.65 Da        Isoelectric Point: 6.9614

>NTDB_id=327461 FNW97_RS11060 WP_000611338.1 2162136..2162792(-) (letA) [Escherichia coli strain ETEC6]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=327461 FNW97_RS11060 WP_000611338.1 2162136..2162792(-) (letA) [Escherichia coli strain ETEC6]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGCGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGCCTTGAGGCGACGCGCAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACGGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGTGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CATTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.691

94.954

0.491
  letA Legionella pneumophila strain ERS1305867

51.691

94.954

0.491