Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   EG882_RS05210 Genome accession   NZ_CP033967
Coordinates   988532..988651 (-) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain 1B-23     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 983532..993651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG882_RS05165 (EG882_05165) speE 983933..984763 (+) 831 WP_124692681.1 spermidine synthase -
  EG882_RS05170 (EG882_05170) speB 984822..985694 (+) 873 WP_095352572.1 agmatinase -
  EG882_RS05175 (EG882_05175) - 985862..986080 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  EG882_RS05185 (EG882_05185) - 986671..987183 (-) 513 WP_031304384.1 stage II sporulation protein M -
  EG882_RS05190 (EG882_05190) - 987227..987508 (-) 282 WP_007407643.1 hypothetical protein -
  EG882_RS05195 (EG882_05195) - 987694..987879 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  EG882_RS05200 (EG882_05200) - 987914..988117 (-) 204 WP_007407641.1 hypothetical protein -
  EG882_RS05205 (EG882_05205) - 988131..988334 (-) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  EG882_RS05210 (EG882_05210) phrF 988532..988651 (-) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  EG882_RS05215 (EG882_05215) rapF 988635..989780 (-) 1146 WP_015240777.1 tetratricopeptide repeat protein Regulator
  EG882_RS05225 (EG882_05225) - 990011..991366 (+) 1356 WP_124692682.1 YncE family protein -
  EG882_RS05230 (EG882_05230) - 991406..992782 (+) 1377 WP_015240775.1 YncE family protein -
  EG882_RS05235 (EG882_05235) - 992789..993301 (-) 513 Protein_977 bacteriocin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=327447 EG882_RS05210 WP_015240778.1 988532..988651(-) (phrF) [Bacillus velezensis strain 1B-23]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=327447 EG882_RS05210 WP_015240778.1 988532..988651(-) (phrF) [Bacillus velezensis strain 1B-23]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment