Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FNZ21_RS25840 Genome accession   NZ_CP041623
Coordinates   5132959..5133564 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O157:H7 strain ATCC 43888     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5127959..5138564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNZ21_RS25820 (FNZ21_25825) aes 5128100..5129059 (+) 960 WP_000801803.1 acetyl esterase -
  FNZ21_RS25825 (FNZ21_25830) hemH 5129056..5130018 (-) 963 WP_001250105.1 ferrochelatase -
  FNZ21_RS25830 (FNZ21_25835) adk 5130150..5130794 (-) 645 WP_001220233.1 adenylate kinase -
  FNZ21_RS25835 (FNZ21_25840) htpG 5130975..5132849 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  FNZ21_RS25840 (FNZ21_25845) recR 5132959..5133564 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FNZ21_RS25845 (FNZ21_25850) ybaB 5133564..5133893 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FNZ21_RS25850 (FNZ21_25855) dnaX 5133946..5135877 (-) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  FNZ21_RS25855 (FNZ21_25860) apt 5136006..5136557 (-) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  FNZ21_RS25860 (FNZ21_25865) ybaN 5136710..5137087 (-) 378 WP_001188905.1 DUF454 family protein -
  FNZ21_RS25865 (FNZ21_25870) priC 5137157..5137684 (+) 528 WP_000844886.1 primosomal replication protein N'' -
  FNZ21_RS25870 (FNZ21_25875) rsmS 5137698..5137862 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=327435 FNZ21_RS25840 WP_001195025.1 5132959..5133564(-) (recR) [Escherichia coli O157:H7 strain ATCC 43888]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=327435 FNZ21_RS25840 WP_001195025.1 5132959..5133564(-) (recR) [Escherichia coli O157:H7 strain ATCC 43888]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment