Detailed information NTG0327435

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: EG882_RS01390
• Genome accession: NZ_CP033967
• Coordinates: 239316..240464 (-)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain 1B-23
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 234316..245464

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EG882_RS01360 (EG882_01360)	-	234454..235212 (-)	759	WP_003156330.1	ABC transporter ATP-binding protein	-
EG882_RS01365 (EG882_01365)	-	235206..236153 (-)	948	WP_007410274.1	iron chelate uptake ABC transporter family permease subunit	-
EG882_RS01370 (EG882_01370)	ceuB	236143..237096 (-)	954	WP_059366593.1	ABC transporter permease	Machinery gene
EG882_RS01375 (EG882_01375)	-	237510..238874 (+)	1365	WP_094031502.1	aspartate kinase	-
EG882_RS01380 (EG882_01380)	-	238969..239064 (+)	96	WP_012116800.1	YjcZ family sporulation protein	-
EG882_RS01385 (EG882_01385)	phrC	239213..239332 (-)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
EG882_RS01390 (EG882_01390)	rapC	239316..240464 (-)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
EG882_RS01395 (EG882_01395)	-	240617..242050 (-)	1434	WP_162492834.1	HAMP domain-containing sensor histidine kinase	-
EG882_RS01400 (EG882_01400)	-	242037..242720 (-)	684	WP_007410267.1	response regulator transcription factor	-
EG882_RS01405 (EG882_01405)	-	242933..244369 (+)	1437	WP_032870816.1	ABC transporter permease	-
EG882_RS01410 (EG882_01410)	-	244384..245067 (+)	684	WP_100001209.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=327435 EG882_RS01390 WP_007410270.1 239316..240464(-) (rapC) [Bacillus velezensis strain 1B-23]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=327435 EG882_RS01390 WP_007410270.1 239316..240464(-) (rapC) [Bacillus velezensis strain 1B-23]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGTGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568