Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   FNZ21_RS06880 Genome accession   NZ_CP041623
Coordinates   1448536..1449126 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli O157:H7 strain ATCC 43888     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1443536..1454126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNZ21_RS06865 (FNZ21_06865) uhpT 1444176..1445567 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  FNZ21_RS06870 (FNZ21_06870) uhpC 1445705..1447024 (-) 1320 WP_001301991.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  FNZ21_RS06875 (FNZ21_06875) uhpB 1447034..1448536 (-) 1503 WP_001303725.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  FNZ21_RS06880 (FNZ21_06880) letA 1448536..1449126 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  FNZ21_RS06885 (FNZ21_06885) - 1449288..1450391 (-) 1104 WP_001089794.1 hypothetical protein -
  FNZ21_RS06890 (FNZ21_06890) - 1450999..1451481 (-) 483 WP_000229982.1 hypothetical protein -
  FNZ21_RS06895 (FNZ21_06895) - 1451629..1452282 (-) 654 WP_000168040.1 hypothetical protein -
  FNZ21_RS06900 (FNZ21_06900) ilvN 1452545..1452835 (-) 291 WP_001181706.1 acetolactate synthase small subunit -

Sequence


Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=327386 FNZ21_RS06880 WP_000633668.1 1448536..1449126(-) (letA) [Escherichia coli O157:H7 strain ATCC 43888]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=327386 FNZ21_RS06880 WP_000633668.1 1448536..1449126(-) (letA) [Escherichia coli O157:H7 strain ATCC 43888]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATTATGCTCTCCGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGTGGCTTTCTCTCCAAGCGTTGTAGCCCTGACGA
ACTGATTGCTGCGGTGCATACGGTTGCCACAGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCACTAACCAAACGTGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGTATGTTTGATGGCTGGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393

  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393

  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378


Multiple sequence alignment