Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FNV62_RS15555 Genome accession   NZ_CP041610
Coordinates   3342410..3344539 (-) Length   709 a.a.
NCBI ID   WP_060902147.1    Uniprot ID   -
Organism   Streptomyces sp. RLB3-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3337410..3349539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV62_RS15540 (FNV62_15770) - 3338271..3339323 (-) 1053 WP_225900263.1 TerC family protein -
  FNV62_RS15545 (FNV62_15775) - 3339607..3341625 (-) 2019 WP_143613003.1 TerD family protein -
  FNV62_RS15550 (FNV62_15780) - 3341671..3342249 (-) 579 WP_054235941.1 TerD family protein -
  FNV62_RS15555 (FNV62_15785) uvrB 3342410..3344539 (-) 2130 WP_060902147.1 excinuclease ABC subunit UvrB Machinery gene
  FNV62_RS15560 (FNV62_15790) - 3344580..3345446 (-) 867 WP_143607788.1 MHYT domain-containing protein -
  FNV62_RS15565 (FNV62_15795) - 3345726..3346601 (+) 876 WP_143601316.1 glycerophosphodiester phosphodiesterase -
  FNV62_RS15570 (FNV62_15800) - 3346694..3347248 (+) 555 WP_143601317.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  FNV62_RS15575 (FNV62_15805) - 3347367..3348641 (+) 1275 WP_054236037.1 MFS transporter -
  FNV62_RS15580 (FNV62_15810) - 3348667..3349029 (-) 363 WP_054235946.1 cupin domain-containing protein -
  FNV62_RS15585 (FNV62_15815) - 3349093..3349521 (-) 429 WP_054235947.1 VOC family protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79918.59 Da        Isoelectric Point: 4.8381

>NTDB_id=327191 FNV62_RS15555 WP_060902147.1 3342410..3344539(-) (uvrB) [Streptomyces sp. RLB3-17]
MRPVSKIERSVAPFEVVSPYQPSGDQPAAIADLEKRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVSLKVGDEIDRDDLLRRFVDIQYTRNDVAFARGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISDDNQVYVFPASHYVAGPERMERAVNDIEKELGERLAELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGREPGSPPNTLIDYFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQQRIGQTVYL
SATPGKYELSRGDGFVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRSGEFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADRITPAMEKAIEETNRRREKQVAYNEERGIDPQPLRKKINDIVAQIAREDIDTEQLLGSGYRKGKDGKGAKAPVPSLGG
KAAKSAKGKAKETVPTDRPAAELTEQIEEMTERMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=327191 FNV62_RS15555 WP_060902147.1 3342410..3344539(-) (uvrB) [Streptomyces sp. RLB3-17]
ATGCGGCCCGTATCAAAGATCGAACGTTCGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCGAGCGGTGACCAGCC
GGCGGCCATCGCCGACCTGGAAAAGCGCATCCGCGCGGGTGAGAAGGATGTCGTCCTGCTGGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACGCTCGTCATGGCACCGAACAAGACGCTGGCCGCA
CAGCTGGCCAACGAGTTCCGCGAGCTGCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGCCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTGGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTCGGCACGCCG
CAGGAGTACGTCGACCGGATGGTCAGCCTCAAGGTCGGCGACGAGATCGACCGCGACGACCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACGTGGCGTTCGCCCGCGGCACCTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCACTCTCCACGCTGCACCCGCTCACCGGT
GAGGTCATCAGCGACGACAACCAGGTCTACGTCTTCCCGGCGTCCCACTACGTGGCCGGACCCGAGCGCATGGAGCGCGC
GGTCAACGACATCGAGAAGGAACTGGGGGAGCGCCTGGCCGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGCC
TGCGCATGCGTACGACGTACGACCTGGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCGAACCCGGCTCCCCGCCGAACACGCTGATCGACTACTTCCCGGACGACTTCCTGCTCGTCCTCGACGA
GTCGCACGTCACGGTCCCGCAGATCGGTGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTGGACAACCGTCCCCTGAAGTGGGAGGAGTTCCAGCAGCGCATCGGGCAGACCGTCTATCTG
TCGGCGACCCCGGGGAAGTACGAACTCTCGCGGGGTGACGGCTTCGTCGAGCAGATCATTCGCCCCACCGGCCTGATCGA
CCCCGAGGTCGTGGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTCGGCATCCAGGTG
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCGTCGAGCTGCTGCGCGAGCTGCGCTCGGGCGAGTTCGACGTCCT
GGTCGGCATCAACCTGCTGCGCGAGGGGCTCGACCTGCCCGAGGTCTCCCTGGTGTCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGTTCGGGTACGTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAATGTCTCCGGCCAGGTCCACATGTAC
GCCGACCGGATCACCCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGGTCGCCTACAACGA
GGAGAGGGGCATCGACCCGCAGCCCCTCCGCAAGAAGATCAACGACATCGTGGCCCAGATCGCCCGCGAGGACATCGACA
CGGAGCAGTTGCTCGGCTCCGGATACCGCAAGGGCAAGGACGGCAAGGGAGCCAAGGCCCCCGTGCCCTCGCTCGGCGGC
AAGGCGGCCAAGTCCGCCAAGGGCAAGGCCAAGGAGACGGTGCCGACGGACCGCCCCGCGGCCGAACTCACCGAGCAGAT
CGAGGAGATGACGGAGCGGATGCGGGCCGCCGCGGCCGACCTCCAGTTCGAGATCGCGGCACGGCTGCGCGACGAGGTGT
CGGAGATGAAGAAGGAGCTGCGCCAGATGAAGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(665-698)

UvrB interaction domain (UvrB_inter)

(168-257)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.664

96.615

0.557
  uvrB Streptococcus pneumoniae R6

57.664

96.615

0.557
  uvrB Streptococcus pneumoniae D39

57.664

96.615

0.557