Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FNV66_RS17000 Genome accession   NZ_CP041607
Coordinates   3383168..3385297 (-) Length   709 a.a.
NCBI ID   WP_060902147.1    Uniprot ID   -
Organism   Streptomyces sp. S1D4-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3378168..3390297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV66_RS16985 (FNV66_17215) - 3379053..3380081 (-) 1029 WP_143601314.1 TerC family protein -
  FNV66_RS16990 (FNV66_17220) - 3380365..3382383 (-) 2019 WP_143601315.1 TerD family protein -
  FNV66_RS16995 (FNV66_17225) - 3382429..3383007 (-) 579 WP_054235941.1 TerD family protein -
  FNV66_RS17000 (FNV66_17230) uvrB 3383168..3385297 (-) 2130 WP_060902147.1 excinuclease ABC subunit UvrB Machinery gene
  FNV66_RS17005 (FNV66_17235) - 3385338..3386204 (-) 867 WP_097284215.1 MHYT domain-containing protein -
  FNV66_RS17010 (FNV66_17240) - 3386484..3387359 (+) 876 WP_143601316.1 glycerophosphodiester phosphodiesterase family protein -
  FNV66_RS17015 (FNV66_17245) - 3387452..3388006 (+) 555 WP_143601317.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  FNV66_RS17020 (FNV66_17250) - 3388125..3389399 (+) 1275 WP_240362538.1 MFS transporter -
  FNV66_RS17025 (FNV66_17255) - 3389413..3389775 (-) 363 WP_054235946.1 cupin domain-containing protein -
  FNV66_RS17030 (FNV66_17260) - 3389839..3390267 (-) 429 WP_143601319.1 VOC family protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79918.59 Da        Isoelectric Point: 4.8381

>NTDB_id=327094 FNV66_RS17000 WP_060902147.1 3383168..3385297(-) (uvrB) [Streptomyces sp. S1D4-14]
MRPVSKIERSVAPFEVVSPYQPSGDQPAAIADLEKRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVSLKVGDEIDRDDLLRRFVDIQYTRNDVAFARGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISDDNQVYVFPASHYVAGPERMERAVNDIEKELGERLAELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGREPGSPPNTLIDYFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQQRIGQTVYL
SATPGKYELSRGDGFVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRSGEFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADRITPAMEKAIEETNRRREKQVAYNEERGIDPQPLRKKINDIVAQIAREDIDTEQLLGSGYRKGKDGKGAKAPVPSLGG
KAAKSAKGKAKETVPTDRPAAELTEQIEEMTERMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=327094 FNV66_RS17000 WP_060902147.1 3383168..3385297(-) (uvrB) [Streptomyces sp. S1D4-14]
ATGCGGCCCGTATCAAAGATCGAACGTTCGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCGAGCGGTGACCAGCC
GGCGGCCATCGCCGACCTGGAAAAGCGCATCCGCGCGGGTGAGAAGGATGTCGTCCTGCTGGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACGCTCGTCATGGCACCGAACAAGACGCTGGCCGCA
CAGCTGGCCAACGAGTTCCGCGAGCTGCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGCCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTGGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTCGGCACGCCG
CAGGAGTACGTCGACCGGATGGTCAGCCTCAAGGTCGGCGACGAGATCGACCGCGACGACCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACGTGGCGTTCGCCCGCGGCACCTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCACTCTCCACGCTGCACCCGCTCACCGGT
GAGGTCATCAGCGACGACAACCAGGTCTACGTCTTCCCCGCGTCCCACTACGTGGCCGGCCCCGAGCGCATGGAGCGCGC
GGTCAACGACATCGAGAAGGAACTGGGGGAGCGCCTGGCCGAGCTGGAGAAGCAGGGCAAGCTCCTCGAGGCCCAGCGCC
TGCGCATGCGTACGACGTACGACCTGGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCGAACCCGGCTCCCCGCCGAACACACTGATCGACTACTTCCCGGACGACTTCCTGCTCGTCCTCGACGA
GTCGCACGTCACGGTCCCGCAGATCGGTGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTGGACAACCGTCCCCTGAAGTGGGAGGAGTTCCAGCAACGCATCGGGCAGACCGTCTATCTG
TCGGCGACCCCGGGGAAGTACGAACTCTCACGGGGTGACGGCTTCGTCGAGCAGATCATCCGCCCCACCGGCCTGATCGA
CCCCGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTCGGCATCCAGGTG
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCGTCGAGCTGCTGCGCGAGCTGCGCTCGGGCGAGTTCGACGTCCT
GGTCGGCATCAACCTGCTGCGCGAGGGGCTCGACCTGCCCGAGGTCTCCCTGGTGTCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGTTCGGGCACGTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAATGTCTCCGGCCAGGTCCACATGTAC
GCCGACCGGATCACCCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGGTCGCCTACAACGA
GGAGAGGGGCATCGACCCGCAGCCCCTCCGCAAGAAGATCAACGACATCGTGGCCCAGATCGCCCGCGAGGACATCGACA
CGGAGCAGTTGCTCGGCTCCGGATACCGCAAGGGCAAGGACGGCAAGGGAGCCAAGGCCCCCGTGCCCTCGCTCGGCGGC
AAGGCGGCCAAGTCCGCCAAGGGCAAGGCCAAGGAGACGGTGCCGACGGACCGCCCCGCGGCCGAACTCACCGAGCAGAT
CGAGGAGATGACGGAGCGGATGCGGGCCGCCGCGGCCGACCTCCAGTTCGAGATCGCGGCACGGCTGCGCGACGAGGTGT
CGGAGATGAAGAAGGAGCTGCGCCAGATGAAGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(665-698)

UvrB interaction domain (UvrB_inter)

(168-257)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.664

96.615

0.557
  uvrB Streptococcus pneumoniae R6

57.664

96.615

0.557
  uvrB Streptococcus pneumoniae D39

57.664

96.615

0.557