Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SPN23F_RS01745 Genome accession   NC_011900
Coordinates   323780..325762 (+) Length   660 a.a.
NCBI ID   WP_000842557.1    Uniprot ID   Q7BV15
Organism   Streptococcus pneumoniae ATCC 700669     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 318780..330762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN23F_RS01720 (SPN23F03340) - 319640..320233 (+) 594 WP_000131451.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  SPN23F_RS01725 (SPN23F03350) rfbB 320246..321295 (+) 1050 WP_000141499.1 dTDP-glucose 4,6-dehydratase -
  SPN23F_RS01730 (SPN23F03360) rfbD 321361..322212 (+) 852 WP_000600912.1 dTDP-4-dehydrorhamnose reductase -
  SPN23F_RS13750 (SPN23F03370) - 322309..323350 (+) 1042 Protein_336 IS66 family transposase -
  SPN23F_RS01745 (SPN23F03390) amiA3 323780..325762 (+) 1983 WP_000842557.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73048.72 Da        Isoelectric Point: 4.7548

>NTDB_id=32661 SPN23F_RS01745 WP_000842557.1 323780..325762(+) (amiA3) [Streptococcus pneumoniae ATCC 700669]
MKSSKLFALAGVTLLAATTLAACSGSGSSAKGEKTFSYIYETDPDNLNYLTTAKAATANITSNVVDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYIIRKDAKWYTSEGEEYAAVKAQDFVTGLKYAADKKSDALYLVQESIKGLDAYVKGEIKDFSQVG
IKALDEQTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSLLYNGPYLLKSIVTKSSVEFAKNPNYWD
KDNVHIDKVKLSFWDGQDTSKPAENFKDGSLTAARLYPTSASFAELEKSMKDNIVYTQQDSITYLVGTNIDRQSYKYTSK
TSDEQKASTKKALLNKDFRQAIAFGFDRTAYASQLNGQTGASKILRNIFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDV
NLADSQDGLYNPEKAKAEFAKAKSALQAEGVTFPIHLDMPVDQTATTKVQRVQSMKQSLEATLGADNVVIDIQQLQKDEV
NNITYFAENAAGEDWDLSDNVGWGPDFADPSTYLDIIKPSVGESTKTYLGFDSGEDNVAAKKVGLYDYEKLVTEAGDEAT
DVAKRYDKYAAAQAWLTDSALIIPTTSRTGRPILSKMVPFTIPFALSGNKGTSEPILYKYLELQDKAVTVDEYQKAQEKW
MKEKEESNKKTQEDLAKHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=32661 SPN23F_RS01745 WP_000842557.1 323780..325762(+) (amiA3) [Streptococcus pneumoniae ATCC 700669]
ATGAAAAGTTCAAAACTATTTGCCCTTGCGGGCGTGACATTATTGGCGGCGACTACTTTAGCTGCATGCTCTGGATCAGG
TTCAAGCGCTAAAGGTGAGAAGACATTCTCATATATTTATGAGACAGACCCTGATAACCTCAACTATTTGACAACTGCTA
AGGCTGCGACAGCAAATATTACCAGTAACGTGGTTGATGGTTTGCTAGAAAATGATCGCTACGGGAACTTTGTGCCGTCT
ATGGCTGAGGATTGGTCTGTATCCAAGGATGGATTGACTTACACTTATATTATCCGTAAGGATGCAAAATGGTATACTTC
TGAAGGGGAAGAATACGCGGCAGTCAAAGCTCAAGACTTTGTAACAGGACTAAAATATGCTGCTGATAAAAAATCAGATG
CTCTTTACCTTGTTCAAGAATCAATCAAAGGGTTGGATGCCTATGTAAAAGGGGAAATCAAAGATTTCTCACAAGTAGGA
ATTAAGGCTCTGGATGAACAGACAGTTCAGTACACTTTGAACAAACCAGAAAGCTTCTGGAATTCTAAGACAACCATGGG
TGTGCTTGCGCCAGTTAATGAAGAGTTTTTGAACTCAAAAGGGGATGATTTTGCCAAAGCTACGGATCCAAGCAGTCTCT
TGTATAATGGACCTTATTTGTTGAAATCCATTGTGACCAAATCTTCTGTTGAATTTGCGAAAAATCCGAACTACTGGGAT
AAGGACAATGTGCATATTGACAAAGTTAAATTGTCATTCTGGGATGGTCAAGATACCAGCAAACCTGCAGAAAACTTTAA
AGATGGTAGCCTTACAGCAGCTCGTCTCTATCCAACAAGTGCAAGTTTCGCAGAGCTTGAGAAGAGTATGAAGGACAATA
TTGTCTATACTCAACAAGACTCTATTACGTATCTAGTTGGTACAAATATTGACCGTCAGTCCTATAAATACACATCTAAG
ACCAGCGACGAACAAAAGGCATCGACTAAAAAGGCTCTCTTAAACAAGGATTTCCGTCAGGCTATTGCCTTTGGTTTTGA
TCGTACAGCCTATGCCTCTCAGTTGAATGGACAAACTGGAGCAAGCAAAATCTTACGTAATATCTTTGTTCCACCAACAT
TTGTTCAAGCAGATGGTAAAAACTTTGGCGATATGGTCAAAGAGAAATTGGTTACTTATGGGGATGAATGGAAGGATGTT
AATCTTGCAGATTCTCAGGATGGTCTTTACAATCCAGAAAAAGCCAAGGCTGAATTTGCTAAAGCTAAATCAGCCTTACA
AGCAGAAGGTGTGACATTCCCAATTCATTTGGATATGCCAGTTGACCAAACAGCAACTACAAAAGTTCAGCGCGTCCAAT
CTATGAAACAATCCTTGGAAGCAACTTTAGGAGCGGATAATGTAGTCATTGATATTCAACAACTACAAAAAGACGAAGTA
AACAATATTACATATTTTGCTGAAAATGCTGCTGGCGAAGACTGGGATTTATCAGATAATGTCGGTTGGGGTCCAGACTT
TGCCGATCCATCAACCTACCTTGATATCATCAAACCATCTGTAGGAGAAAGTACTAAAACATATTTAGGGTTTGACTCAG
GGGAAGATAATGTAGCTGCTAAAAAAGTAGGTCTATATGACTACGAAAAATTGGTCACTGAGGCTGGTGATGAGGCTACA
GATGTTGCTAAACGCTATGATAAATACGCTGCAGCCCAAGCTTGGTTGACAGATAGTGCTTTGATTATTCCAACTACATC
TCGTACAGGGCGCCCAATCTTGTCTAAGATGGTACCATTTACAATACCATTTGCATTGTCAGGAAATAAAGGTACAAGTG
AACCAATCTTATATAAATACTTGGAACTTCAAGACAAGGCAGTCACTGTAGATGAATACCAAAAAGCTCAGGAAAAATGG
ATGAAAGAAAAAGAAGAGTCTAATAAAAAGACTCAAGAAGATCTCGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7BV15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.094

100

0.582
  amiA3 Streptococcus thermophilus LMG 18311

57.791

100

0.579
  amiA Streptococcus salivarius strain HSISS4

57.791

100

0.579

Multiple sequence alignment