Detailed information NTG0326461

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: EGY13_RS12220
• Genome accession: NZ_CP033858
• Coordinates: 2397611..2398312 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter sp. FDAARGOS_493
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2392611..2403312

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGY13_RS12190 (EGY13_12200)	-	2392918..2393361 (-)	444	WP_001246673.1	SRPBCC family protein	-
EGY13_RS12195 (EGY13_12205)	tadA	2393431..2393934 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
EGY13_RS12200 (EGY13_12210)	-	2393941..2395065 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
EGY13_RS12205 (EGY13_12215)	ung	2395062..2395775 (-)	714	WP_001177529.1	uracil-DNA glycosylase	-
EGY13_RS12210 (EGY13_12220)	-	2395826..2396422 (-)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
EGY13_RS12215 (EGY13_12225)	gspK	2396652..2397611 (-)	960	WP_000301460.1	type II secretion system minor pseudopilin GspK	-
EGY13_RS12220 (EGY13_12230)	xcpW	2397611..2398312 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
EGY13_RS12225 (EGY13_12235)	xcpV	2398312..2398692 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
EGY13_RS12230 (EGY13_12240)	-	2398682..2399236 (-)	555	WP_000841367.1	type II secretion system protein	-
EGY13_RS12235 (EGY13_12245)	-	2399246..2399854 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
EGY13_RS12240 (EGY13_12250)	-	2399892..2400665 (-)	774	WP_000497302.1	TatD family hydrolase	-
EGY13_RS12245 (EGY13_12255)	-	2400683..2401024 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
EGY13_RS12250 (EGY13_12260)	-	2401036..2402016 (-)	981	WP_001075413.1	DNA polymerase III subunit delta'	-
EGY13_RS12255 (EGY13_12265)	kdsB	2402028..2402789 (-)	762	WP_000680703.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=326461 EGY13_RS12220 WP_000594572.1 2397611..2398312(-) (xcpW) [Acinetobacter sp. FDAARGOS_493]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=326461 EGY13_RS12220 WP_000594572.1 2397611..2398312(-) (xcpW) [Acinetobacter sp. FDAARGOS_493]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991