Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FNE83_RS01905 Genome accession   NZ_CP041431
Coordinates   425758..426390 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain STEC316     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 420758..431390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNE83_RS01880 (FNE83_01930) yhfG 420890..421057 (+) 168 WP_000736860.1 YhfG family protein -
  FNE83_RS01885 (FNE83_01935) fic 421047..421649 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  FNE83_RS01890 (FNE83_01940) pabA 421681..422244 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  FNE83_RS01895 (FNE83_01945) argD 422330..423550 (+) 1221 WP_000963805.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  FNE83_RS01900 (FNE83_01950) yhfK 423617..425707 (-) 2091 WP_001345983.1 YccS/YhfK family putative transporter -
  FNE83_RS01905 (FNE83_01955) crp 425758..426390 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  FNE83_RS01910 (FNE83_01960) yhfA 426692..427096 (+) 405 WP_001148908.1 OsmC family protein -
  FNE83_RS01915 (FNE83_01965) prkB 427151..428020 (-) 870 WP_001274680.1 phosphoribulokinase -
  FNE83_RS01920 (FNE83_01970) yheU 428074..428292 (-) 219 WP_000907085.1 YheU family protein -
  FNE83_RS01925 (FNE83_01975) yheT 428286..429308 (-) 1023 WP_161620607.1 hydrolase -
  FNE83_RS01930 (FNE83_01980) yheS 429308..431221 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=326329 FNE83_RS01905 WP_000242755.1 425758..426390(-) (crp) [Escherichia coli strain STEC316]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=326329 FNE83_RS01905 WP_000242755.1 425758..426390(-) (crp) [Escherichia coli strain STEC316]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467