Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   FNE85_RS03490 Genome accession   NZ_CP041425
Coordinates   714444..715103 (-) Length   219 a.a.
NCBI ID   WP_001221493.1    Uniprot ID   Q3YXL4
Organism   Escherichia coli strain STEC388     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 709444..720103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNE85_RS03465 (FNE85_03515) ygiN 710345..710659 (-) 315 WP_000958598.1 putative quinol monooxygenase -
  FNE85_RS03470 (FNE85_03520) mdaB 710690..711271 (-) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  FNE85_RS26100 - 711521..712000 (+) 480 WP_000065333.1 Hcp family type VI secretion system effector -
  FNE85_RS26105 - 712003..712713 (+) 711 WP_000834029.1 hypothetical protein -
  FNE85_RS03480 (FNE85_03530) ygiZ 712720..713052 (+) 333 WP_000914691.1 DUF2645 family protein -
  FNE85_RS03485 (FNE85_03535) qseC 713098..714447 (-) 1350 WP_000673402.1 quorum sensing histidine kinase QseC -
  FNE85_RS03490 (FNE85_03540) ciaR 714444..715103 (-) 660 WP_001221493.1 quorum sensing response regulator transcription factor QseB Regulator
  FNE85_RS03495 (FNE85_03545) ygiW 715255..715647 (+) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  FNE85_RS03500 (FNE85_03550) ygiV 715700..716182 (+) 483 WP_000183505.1 GyrI-like domain-containing protein -
  FNE85_RS03505 (FNE85_03555) mqsR 716387..716683 (+) 297 WP_000415584.1 type II toxin-antitoxin system toxin MqsR -
  FNE85_RS03510 (FNE85_03560) mqsA 716685..717080 (+) 396 WP_000650107.1 type II toxin-antitoxin system antitoxin MqsA -
  FNE85_RS03515 (FNE85_03565) ygiS 717213..718820 (+) 1608 WP_001295629.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24687.63 Da        Isoelectric Point: 6.9850

>NTDB_id=326168 FNE85_RS03490 WP_001221493.1 714444..715103(-) (ciaR) [Escherichia coli strain STEC388]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=326168 FNE85_RS03490 WP_001221493.1 714444..715103(-) (ciaR) [Escherichia coli strain STEC388]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YXL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365