Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A2CP1_RS19910 Genome accession   NC_011891
Coordinates   4403278..4403763 (+) Length   161 a.a.
NCBI ID   WP_015935002.1    Uniprot ID   B8J8I8
Organism   Anaeromyxobacter dehalogenans 2CP-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4398278..4408763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2CP1_RS19895 (A2cp1_3948) - 4399146..4400270 (+) 1125 WP_015934999.1 Gfo/Idh/MocA family oxidoreductase -
  A2CP1_RS19900 (A2cp1_3949) - 4400340..4400798 (-) 459 WP_041450722.1 Fur family transcriptional regulator -
  A2CP1_RS19905 (A2cp1_3950) dacB 4400956..4403175 (+) 2220 WP_245529859.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  A2CP1_RS19910 (A2cp1_3951) ssb 4403278..4403763 (+) 486 WP_015935002.1 single-stranded DNA-binding protein Machinery gene
  A2CP1_RS19915 (A2cp1_3952) - 4403913..4404692 (+) 780 WP_015935003.1 DUF4253 domain-containing protein -
  A2CP1_RS19920 (A2cp1_3953) - 4404725..4405573 (+) 849 WP_015935004.1 GIY-YIG nuclease family protein -
  A2CP1_RS19925 (A2cp1_3954) - 4405850..4408762 (+) 2913 WP_015935005.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 16905.54 Da        Isoelectric Point: 6.4816

>NTDB_id=32609 A2CP1_RS19910 WP_015935002.1 4403278..4403763(+) (ssb) [Anaeromyxobacter dehalogenans 2CP-1]
MVNRVILVGNLGKDPEVRYTSGGQAVANLRIATSRSWTDKQSGQRKEETEWHDVEVWGKQAEQCGEYLAKGRQVYVEGRL
KTDKWQDKQSGQERSKVKVVAETVRFLGGGGGAGRGAGGPGRQHGPDDAPPGGFEEPDSGPGPGFGSGGGAGGGGPDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=32609 A2CP1_RS19910 WP_015935002.1 4403278..4403763(+) (ssb) [Anaeromyxobacter dehalogenans 2CP-1]
ATGGTGAACAGGGTCATCCTCGTCGGGAACCTCGGGAAGGATCCGGAGGTCCGGTACACGTCCGGCGGCCAGGCGGTCGC
GAACCTCCGCATCGCCACCTCCCGCTCCTGGACCGACAAGCAGTCCGGGCAGCGCAAGGAGGAGACGGAGTGGCACGACG
TCGAGGTCTGGGGGAAGCAGGCCGAGCAGTGCGGTGAGTACCTGGCGAAGGGCCGCCAGGTCTACGTCGAGGGCCGGCTC
AAGACCGACAAGTGGCAGGACAAGCAGTCCGGCCAGGAGCGCTCGAAGGTGAAGGTGGTCGCCGAGACCGTCCGGTTCCT
CGGCGGTGGCGGCGGCGCCGGCCGCGGCGCCGGCGGCCCCGGCCGCCAGCACGGCCCCGACGACGCCCCTCCGGGCGGCT
TCGAGGAGCCGGATTCCGGCCCTGGCCCCGGCTTCGGCTCGGGGGGCGGCGCGGGCGGCGGTGGGCCGGACGACATTCCG
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8J8I8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.505

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

38.068

100

0.416
  ssb Glaesserella parasuis strain SC1401

50

75.776

0.379

Multiple sequence alignment