Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FNE86_RS01760 Genome accession   NZ_CP041422
Coordinates   390349..390981 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain STEC409     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 385349..395981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNE86_RS01735 (FNE86_01765) yhfG 385482..385649 (+) 168 WP_000736860.1 YhfG family protein -
  FNE86_RS01740 (FNE86_01770) fic 385639..386241 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  FNE86_RS01745 (FNE86_01775) pabA 386273..386836 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  FNE86_RS01750 (FNE86_01780) argD 386922..388142 (+) 1221 WP_001618902.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  FNE86_RS01755 (FNE86_01785) yhfK 388208..390298 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  FNE86_RS01760 (FNE86_01790) crp 390349..390981 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  FNE86_RS01765 (FNE86_01795) yhfA 391283..391687 (+) 405 WP_001148910.1 OsmC family protein -
  FNE86_RS01770 (FNE86_01800) prkB 391742..392611 (-) 870 WP_096921011.1 phosphoribulokinase -
  FNE86_RS01775 (FNE86_01805) yheU 392665..392883 (-) 219 WP_000907085.1 YheU family protein -
  FNE86_RS01780 (FNE86_01810) yheT 392877..393899 (-) 1023 WP_000057379.1 hydrolase -
  FNE86_RS01785 (FNE86_01815) yheS 393899..395812 (-) 1914 WP_000634789.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=326087 FNE86_RS01760 WP_000242755.1 390349..390981(-) (crp) [Escherichia coli strain STEC409]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=326087 FNE86_RS01760 WP_000242755.1 390349..390981(-) (crp) [Escherichia coli strain STEC409]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467