Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   FNL90_RS09330 Genome accession   NZ_CP041408
Coordinates   1850567..1851163 (-) Length   198 a.a.
NCBI ID   WP_011185063.1    Uniprot ID   A2RGV1
Organism   Streptococcus pyogenes strain 37-97S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1845567..1856163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL90_RS09310 (FNL90_09655) spx 1846743..1847141 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  FNL90_RS09315 (FNL90_09660) recA 1847432..1848568 (-) 1137 WP_047235553.1 recombinase RecA Machinery gene
  FNL90_RS09320 (FNL90_09665) cinA 1848657..1849928 (-) 1272 WP_047235554.1 competence/damage-inducible protein A Machinery gene
  FNL90_RS09325 (FNL90_09670) - 1849997..1850557 (-) 561 WP_009880528.1 DNA-3-methyladenine glycosylase I -
  FNL90_RS09330 (FNL90_09675) ruvA 1850567..1851163 (-) 597 WP_011185063.1 Holliday junction branch migration protein RuvA Machinery gene
  FNL90_RS09335 (FNL90_09680) - 1851165..1852385 (-) 1221 WP_002992187.1 MFS transporter -
  FNL90_RS09340 (FNL90_09685) hexB 1852396..1854378 (-) 1983 WP_009880530.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21852.19 Da        Isoelectric Point: 6.4948

>NTDB_id=325916 FNL90_RS09330 WP_011185063.1 1850567..1851163(-) (ruvA) [Streptococcus pyogenes strain 37-97S]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGHTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=325916 FNL90_RS09330 WP_011185063.1 1850567..1851163(-) (ruvA) [Streptococcus pyogenes strain 37-97S]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTCATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAAGCAACAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATA
CATCAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RGV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae R6

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae D39

66.497

99.495

0.662
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.394

100

0.414