Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   FNL90_RS07980 Genome accession   NZ_CP041408
Coordinates   1545893..1547908 (-) Length   671 a.a.
NCBI ID   WP_047235457.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 37-97S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1540893..1552908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL90_RS07960 (FNL90_08230) - 1541207..1542595 (-) 1389 WP_009881044.1 Cof-type HAD-IIB family hydrolase -
  FNL90_RS07965 (FNL90_08235) - 1542667..1543632 (+) 966 WP_002983258.1 asparaginase -
  FNL90_RS07970 (FNL90_08240) - 1543981..1544685 (-) 705 WP_002988556.1 ABC transporter permease -
  FNL90_RS07975 (FNL90_08245) - 1544698..1545600 (-) 903 WP_047235456.1 ABC transporter ATP-binding protein -
  FNL90_RS07980 (FNL90_08250) recG/mmsA 1545893..1547908 (-) 2016 WP_047235457.1 ATP-dependent DNA helicase RecG Machinery gene
  FNL90_RS07985 (FNL90_08260) - 1548283..1549737 (-) 1455 WP_011285690.1 ABC transporter ATP-binding protein -
  FNL90_RS07990 (FNL90_08265) - 1549674..1550354 (-) 681 WP_002983239.1 energy-coupling factor transporter transmembrane component T -
  FNL90_RS07995 (FNL90_08270) - 1550351..1550944 (-) 594 WP_002995377.1 MptD family putative ECF transporter S component -
  FNL90_RS08000 (FNL90_08275) - 1550941..1552611 (-) 1671 WP_023079703.1 amino acid ABC transporter ATP-binding/permease protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75204.99 Da        Isoelectric Point: 7.3762

>NTDB_id=325901 FNL90_RS07980 WP_047235457.1 1545893..1547908(-) (recG/mmsA) [Streptococcus pyogenes strain 37-97S]
MILTAPMSNLKGFGPKSAEKFQKLDIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEKAVITGLVVTPANVQYYGFKRNRLS
FKLRQGEAVLNVSFFNQPYLADKIELGQEVAVFGKWDATKSAITGMKVLAQVEDDMQPVYRVAQGISQSTLIKAIKSAFE
IDAHLELKENLPATLLEKYRLMGRSQACLAMHFPKDITEYKQALRRIKFEELFYFQMNLQVLKAENRSETNGLPILYSKH
AMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVGSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYIS
LQELFPDLSIAILTSGMKAAVKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDAQVYVISPLIEESEALDLKN
AVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGYKQSYAVLVANPKTDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK
VSAAIVSDPNWIYEKQWQLVAKNIRKKEVYD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=325901 FNL90_RS07980 WP_047235457.1 1545893..1547908(-) (recG/mmsA) [Streptococcus pyogenes strain 37-97S]
ATGATATTAACAGCTCCTATGTCCAACTTAAAGGGATTTGGACCAAAATCAGCAGAAAAATTTCAGAAATTAGATATTTA
TACAGTAGAAGATTTACTGCTTTATTATCCGTTTCGCTATGAAGATTTTAAATCAAAATCTGTTTTTGATTTAGTGGATG
GTGAAAAAGCAGTCATTACAGGCTTAGTCGTTACTCCAGCTAATGTACAATATTATGGTTTTAAACGTAACCGTTTAAGT
TTCAAATTGCGTCAAGGGGAAGCTGTCTTAAATGTTAGTTTTTTTAATCAACCCTATTTAGCTGATAAAATAGAACTTGG
TCAAGAGGTAGCTGTTTTTGGTAAATGGGATGCCACTAAATCGGCTATTACTGGGATGAAGGTTTTAGCTCAAGTTGAAG
ATGACATGCAACCTGTTTATCGCGTAGCTCAGGGAATTTCACAGTCTACTTTGATTAAAGCTATTAAGTCAGCTTTTGAA
ATCGATGCGCATTTGGAATTGAAGGAAAATTTACCAGCTACTTTATTGGAAAAATACCGATTGATGGGTCGTAGTCAGGC
TTGTTTAGCTATGCATTTCCCAAAAGATATCACAGAGTATAAGCAAGCGCTCCGTCGGATTAAATTTGAAGAATTATTTT
ACTTTCAAATGAACCTTCAAGTTTTGAAAGCCGAAAATAGATCTGAAACAAATGGTTTGCCTATTCTTTATAGTAAACAT
GCTATGGAGACAAAGATTTCCTCTTTACCCTTTATTCTAACAAATGCTCAAAAGCGCTCTTTAGATGACATATTATCTGA
TATGTCATCGGGAGCTCATATGAATCGTTTATTGCAAGGAGATGTAGGATCAGGAAAGACAGTCATTGCTGGTCTATCAA
TGTATGCAGCTTATACAGCAGGTTTTCAATCGGCTTTGATGGTTCCAACGGAAATCCTAGCTGAACAACACTACATTAGT
CTGCAAGAGTTATTTCCAGATCTATCAATTGCTATATTAACTTCGGGTATGAAAGCCGCTGTCAAGCGTACGGTTTTAGC
AGCTATTGCAAATGGCTCGGTTGATATGATTGTAGGAACTCATGCTCTTATCCAAGACTCGGTACAGTACCATAAACTGG
GGCTTGTCATTACAGACGAGCAACATCGTTTTGGTGTTAAACAGCGTAGAATTTTCCGTGAAAAGGGAGAAAATCCTGAT
GTTTTAATGATGACAGCCACCCCAATTCCCCGAACTCTAGCAATCACAGCTTTTGGAGAAATGGATGTTTCTGTTATTGA
TGAATTACCTGCCGGTCGTAAACCTATTATGACACGCTGGGTGAAACACGAGCAGCTAGGGACTGTGTTGGAATGGGTAA
AAGGTGAATTGCAAAAAGATGCTCAAGTGTATGTCATTTCACCGTTGATTGAAGAATCAGAAGCTTTAGATTTAAAGAAT
GCAGTAGCATTGCATGCTGAATTATCTACTTATTTTGAAGGAATTGCTAAGGTTGCTCTTGTACATGGACGTATGAAAAA
TGATGAAAAAGATGCTATAATGCAAGATTTCAAGGATAAAAAAAGTCATATTTTAGTATCCACAACAGTTATTGAAGTAG
GGGTAAATGTCCCAAATGCAACGATCATGATTATTATGGATGCCGATCGTTTTGGATTAAGTCAGTTACATCAACTTCGT
GGGCGTGTTGGTCGTGGATATAAACAATCATACGCTGTTTTAGTGGCTAATCCCAAAACGGATTCGGGGAAAAAACGAAT
GACAATCATGACAGAAACGACAGATGGTTTCGTTTTAGCTGAGTCGGATTTAAAAATGCGTGGTTCTGGTGAAATCTTTG
GTACTCGTCAGTCTGGAATTCCAGAATTTCAAGTAGCTGATATCGTTGAGGATTATCCTATTTTAGAAGAAGCACGCAAA
GTTTCTGCAGCGATTGTTTCTGATCCTAACTGGATATATGAAAAACAGTGGCAATTAGTAGCAAAAAATATTAGAAAAAA
AGAAGTTTATGATTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(254-411)

Helicase conserved C-terminal domain (Helicase_C)

(458-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-665)

RecG wedge domain (RecG_wedge)

(10-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.684

100

0.717
  recG/mmsA Streptococcus pneumoniae R36A

71.684

100

0.717
  recG Bacillus subtilis subsp. subtilis str. 168

49.254

99.851

0.492
  recG Neisseria meningitidis strain C311

38.405

100

0.387