Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HAPS_RS11095 Genome accession   NC_011852
Coordinates   2255162..2255839 (+) Length   225 a.a.
NCBI ID   WP_005712510.1    Uniprot ID   -
Organism   Glaesserella parasuis SH0165     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2250162..2260839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAPS_RS11080 (HAPS_2282) aroB 2250599..2251687 (-) 1089 WP_005712516.1 3-dehydroquinate synthase -
  HAPS_RS11085 (HAPS_2283) aroK 2251702..2252223 (-) 522 WP_015940157.1 shikimate kinase AroK -
  HAPS_RS11090 (HAPS_2284) - 2252453..2255008 (-) 2556 WP_015940158.1 penicillin-binding protein 1A -
  HAPS_RS11095 (HAPS_2285) comA 2255162..2255839 (+) 678 WP_005712510.1 hypothetical protein Machinery gene
  HAPS_RS11100 (HAPS_2286) comB 2255815..2256336 (+) 522 WP_010785956.1 hypothetical protein Machinery gene
  HAPS_RS11105 (HAPS_2287) comC 2256333..2256863 (+) 531 WP_015940159.1 hypothetical protein Machinery gene
  HAPS_RS11110 (HAPS_2288) comD 2256908..2257249 (+) 342 WP_230205898.1 hypothetical protein Machinery gene
  HAPS_RS11115 (HAPS_2289) comE 2257259..2258521 (+) 1263 WP_015940161.1 type IV pilus secretin PilQ Machinery gene
  HAPS_RS11120 (HAPS_2290) nusB 2258600..2259013 (+) 414 WP_010785952.1 transcription antitermination factor NusB -
  HAPS_RS11125 (HAPS_2291) thiL 2259022..2259990 (+) 969 WP_015940162.1 thiamine-phosphate kinase -
  HAPS_RS11130 (HAPS_2292) - 2259993..2260463 (+) 471 WP_021117942.1 phosphatidylglycerophosphatase A -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26299.31 Da        Isoelectric Point: 7.3026

>NTDB_id=32588 HAPS_RS11095 WP_005712510.1 2255162..2255839(+) (comA) [Glaesserella parasuis SH0165]
MGKFFQFRTTPQLKPIQVGFFWQENTACIVYFEQEQPHTFYFSSKVEADSFLQQFPFNYQLIQGISHQHIWRKTLILPEL
HSHLKQAEQIIRVLKQSLPLALSEVNIDYHITPLAESHLCQLNLYALRKSNSFDPTAILDCELYCLLRAVGFLTKITETQ
ILEHSFHIQDKFIHFQNQRIIVEKQNNSTKPIIEVDGLPQAQHFPHFYPYLIALGASLWNGKVSI

Nucleotide


Download         Length: 678 bp        

>NTDB_id=32588 HAPS_RS11095 WP_005712510.1 2255162..2255839(+) (comA) [Glaesserella parasuis SH0165]
ATGGGTAAATTCTTTCAATTTCGTACAACACCGCAACTCAAACCTATTCAAGTTGGCTTTTTCTGGCAAGAAAATACCGC
TTGTATCGTCTATTTTGAACAAGAACAACCTCACACCTTTTACTTTTCAAGCAAAGTAGAAGCGGATAGTTTCCTACAAC
AATTTCCCTTTAACTATCAGCTTATTCAAGGCATTTCTCATCAGCATATTTGGCGAAAAACCTTGATACTGCCAGAGCTA
CATTCCCATTTAAAACAAGCTGAGCAAATCATTCGTGTACTCAAACAGAGCCTACCTTTAGCTTTATCTGAAGTAAACAT
TGATTACCACATTACCCCTTTAGCCGAAAGCCACCTTTGCCAGCTTAATCTATATGCTCTAAGAAAAAGCAACAGCTTTG
ACCCAACGGCTATTTTAGATTGCGAACTCTACTGCCTACTACGAGCGGTAGGATTTCTGACAAAAATAACGGAAACGCAA
ATTCTTGAACACAGTTTCCACATTCAAGACAAATTTATTCACTTTCAAAATCAACGAATTATCGTCGAAAAGCAGAATAA
TAGCACCAAACCAATCATTGAAGTGGACGGCTTGCCCCAAGCTCAACACTTTCCCCATTTTTATCCTTATCTTATTGCAT
TAGGAGCGAGCTTATGGAATGGCAAGGTATCAATCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Glaesserella parasuis strain SC1401

98.667

100

0.987

Multiple sequence alignment