Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | HAPS_RS11110 | Genome accession | NC_011852 |
| Coordinates | 2256908..2257249 (+) | Length | 113 a.a. |
| NCBI ID | WP_230205898.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis SH0165 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2251908..2262249
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAPS_RS11090 (HAPS_2284) | - | 2252453..2255008 (-) | 2556 | WP_015940158.1 | penicillin-binding protein 1A | - |
| HAPS_RS11095 (HAPS_2285) | comA | 2255162..2255839 (+) | 678 | WP_005712510.1 | hypothetical protein | Machinery gene |
| HAPS_RS11100 (HAPS_2286) | comB | 2255815..2256336 (+) | 522 | WP_010785956.1 | hypothetical protein | Machinery gene |
| HAPS_RS11105 (HAPS_2287) | comC | 2256333..2256863 (+) | 531 | WP_015940159.1 | hypothetical protein | Machinery gene |
| HAPS_RS11110 (HAPS_2288) | comD | 2256908..2257249 (+) | 342 | WP_230205898.1 | hypothetical protein | Machinery gene |
| HAPS_RS11115 (HAPS_2289) | comE | 2257259..2258521 (+) | 1263 | WP_015940161.1 | type IV pilus secretin PilQ | Machinery gene |
| HAPS_RS11120 (HAPS_2290) | nusB | 2258600..2259013 (+) | 414 | WP_010785952.1 | transcription antitermination factor NusB | - |
| HAPS_RS11125 (HAPS_2291) | thiL | 2259022..2259990 (+) | 969 | WP_015940162.1 | thiamine-phosphate kinase | - |
| HAPS_RS11130 (HAPS_2292) | - | 2259993..2260463 (+) | 471 | WP_021117942.1 | phosphatidylglycerophosphatase A | - |
| HAPS_RS11135 (HAPS_2293) | - | 2260465..2261094 (+) | 630 | WP_015940164.1 | LysE family transporter | - |
| HAPS_RS11140 (HAPS_2294) | trxA | 2261391..2261705 (+) | 315 | WP_015940165.1 | thioredoxin | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 13177.90 Da Isoelectric Point: 4.8667
>NTDB_id=32591 HAPS_RS11110 WP_230205898.1 2256908..2257249(+) (comD) [Glaesserella parasuis SH0165]
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPNDYLSHS
FIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPNDYLSHS
FIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF
Nucleotide
Download Length: 342 bp
>NTDB_id=32591 HAPS_RS11110 WP_230205898.1 2256908..2257249(+) (comD) [Glaesserella parasuis SH0165]
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATTCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATATCCTAACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAGATTGATTTTAAATCGGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATTCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATATCCTAACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAGATTGATTTTAAATCGGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Glaesserella parasuis strain SC1401 |
92.92 |
100 |
0.929 |