Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | HAPS_RS11100 | Genome accession | NC_011852 |
| Coordinates | 2255815..2256336 (+) | Length | 173 a.a. |
| NCBI ID | WP_010785956.1 | Uniprot ID | B8F8R3 |
| Organism | Glaesserella parasuis SH0165 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2250815..2261336
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAPS_RS11085 (HAPS_2283) | aroK | 2251702..2252223 (-) | 522 | WP_015940157.1 | shikimate kinase AroK | - |
| HAPS_RS11090 (HAPS_2284) | - | 2252453..2255008 (-) | 2556 | WP_015940158.1 | penicillin-binding protein 1A | - |
| HAPS_RS11095 (HAPS_2285) | comA | 2255162..2255839 (+) | 678 | WP_005712510.1 | hypothetical protein | Machinery gene |
| HAPS_RS11100 (HAPS_2286) | comB | 2255815..2256336 (+) | 522 | WP_010785956.1 | hypothetical protein | Machinery gene |
| HAPS_RS11105 (HAPS_2287) | comC | 2256333..2256863 (+) | 531 | WP_015940159.1 | hypothetical protein | Machinery gene |
| HAPS_RS11110 (HAPS_2288) | comD | 2256908..2257249 (+) | 342 | WP_230205898.1 | hypothetical protein | Machinery gene |
| HAPS_RS11115 (HAPS_2289) | comE | 2257259..2258521 (+) | 1263 | WP_015940161.1 | type IV pilus secretin PilQ | Machinery gene |
| HAPS_RS11120 (HAPS_2290) | nusB | 2258600..2259013 (+) | 414 | WP_010785952.1 | transcription antitermination factor NusB | - |
| HAPS_RS11125 (HAPS_2291) | thiL | 2259022..2259990 (+) | 969 | WP_015940162.1 | thiamine-phosphate kinase | - |
| HAPS_RS11130 (HAPS_2292) | - | 2259993..2260463 (+) | 471 | WP_021117942.1 | phosphatidylglycerophosphatase A | - |
| HAPS_RS11135 (HAPS_2293) | - | 2260465..2261094 (+) | 630 | WP_015940164.1 | LysE family transporter | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 20279.96 Da Isoelectric Point: 7.3557
>NTDB_id=32589 HAPS_RS11100 WP_010785956.1 2255815..2256336(+) (comB) [Glaesserella parasuis SH0165]
MEWQGINLNGYRQQQWLKQSQKNLKHLTACLVVSALLALLISWQNQQQQHQFHTLAQQRQQSQEQQTALSQQIEQLTLQS
QNKSTQSLENRQITAFLNYLLGIQLSGIIEIAQLYQAENTVFKLKGKVSSPTQFSQLEQQLKAMNYIYQIEQFETREKSE
IEFSLHIDLKEKE
MEWQGINLNGYRQQQWLKQSQKNLKHLTACLVVSALLALLISWQNQQQQHQFHTLAQQRQQSQEQQTALSQQIEQLTLQS
QNKSTQSLENRQITAFLNYLLGIQLSGIIEIAQLYQAENTVFKLKGKVSSPTQFSQLEQQLKAMNYIYQIEQFETREKSE
IEFSLHIDLKEKE
Nucleotide
Download Length: 522 bp
>NTDB_id=32589 HAPS_RS11100 WP_010785956.1 2255815..2256336(+) (comB) [Glaesserella parasuis SH0165]
ATGGAATGGCAAGGTATCAATCTAAACGGCTATCGCCAACAGCAATGGTTGAAACAGTCGCAAAAAAACCTCAAGCATCT
CACTGCTTGTCTTGTGGTTAGCGCACTACTGGCGTTACTTATCAGTTGGCAAAATCAACAGCAACAACATCAATTTCACA
CTTTGGCTCAACAGCGACAACAAAGCCAAGAGCAACAAACCGCATTAAGCCAGCAGATTGAACAACTGACTTTGCAATCA
CAAAATAAAAGCACACAAAGCCTAGAGAACAGACAGATTACCGCATTTTTGAATTATCTGTTAGGCATTCAATTATCAGG
GATTATTGAGATAGCCCAACTATACCAAGCAGAAAATACCGTCTTTAAACTCAAAGGCAAGGTGTCTAGCCCTACTCAAT
TTAGCCAGCTTGAACAACAATTAAAAGCAATGAATTACATTTATCAAATAGAACAATTTGAAACGCGTGAAAAAAGCGAG
ATTGAATTTAGCCTACATATTGATTTAAAGGAAAAAGAATGA
ATGGAATGGCAAGGTATCAATCTAAACGGCTATCGCCAACAGCAATGGTTGAAACAGTCGCAAAAAAACCTCAAGCATCT
CACTGCTTGTCTTGTGGTTAGCGCACTACTGGCGTTACTTATCAGTTGGCAAAATCAACAGCAACAACATCAATTTCACA
CTTTGGCTCAACAGCGACAACAAAGCCAAGAGCAACAAACCGCATTAAGCCAGCAGATTGAACAACTGACTTTGCAATCA
CAAAATAAAAGCACACAAAGCCTAGAGAACAGACAGATTACCGCATTTTTGAATTATCTGTTAGGCATTCAATTATCAGG
GATTATTGAGATAGCCCAACTATACCAAGCAGAAAATACCGTCTTTAAACTCAAAGGCAAGGTGTCTAGCCCTACTCAAT
TTAGCCAGCTTGAACAACAATTAAAAGCAATGAATTACATTTATCAAATAGAACAATTTGAAACGCGTGAAAAAAGCGAG
ATTGAATTTAGCCTACATATTGATTTAAAGGAAAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Glaesserella parasuis strain SC1401 |
97.11 |
100 |
0.971 |