Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HAPS_RS07770 Genome accession   NC_011852
Coordinates   1588060..1588698 (-) Length   212 a.a.
NCBI ID   WP_005711167.1    Uniprot ID   B8F752
Organism   Glaesserella parasuis SH0165     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583060..1593698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAPS_RS07755 (HAPS_1600) - 1584072..1585043 (+) 972 WP_012621529.1 IS110 family transposase -
  HAPS_RS07760 (HAPS_1601) - 1585159..1586337 (-) 1179 WP_015939850.1 ATP-grasp domain-containing protein -
  HAPS_RS07765 (HAPS_1602) fumC 1586519..1587913 (-) 1395 WP_010786461.1 class II fumarate hydratase -
  HAPS_RS07770 (HAPS_1603) sxy/tfoX 1588060..1588698 (-) 639 WP_005711167.1 TfoX/Sxy family protein Regulator
  HAPS_RS07775 (HAPS_1605) rpsJ 1589157..1589468 (+) 312 WP_001181005.1 30S ribosomal protein S10 -
  HAPS_RS07780 (HAPS_1606) rplC 1589485..1590111 (+) 627 WP_010786462.1 50S ribosomal protein L3 -
  HAPS_RS07785 (HAPS_1607) rplD 1590127..1590729 (+) 603 WP_005711169.1 50S ribosomal protein L4 -
  HAPS_RS07790 (HAPS_1608) rplW 1590726..1591031 (+) 306 WP_005599290.1 50S ribosomal protein L23 -
  HAPS_RS07795 (HAPS_1609) rplB 1591052..1591873 (+) 822 WP_015939852.1 50S ribosomal protein L2 -
  HAPS_RS07800 (HAPS_1610) rpsS 1591902..1592177 (+) 276 WP_005539416.1 30S ribosomal protein S19 -
  HAPS_RS07805 (HAPS_1611) rplV 1592188..1592520 (+) 333 WP_005706427.1 50S ribosomal protein L22 -
  HAPS_RS07810 (HAPS_1612) rpsC 1592538..1593242 (+) 705 WP_010786465.1 30S ribosomal protein S3 -
  HAPS_RS07815 (HAPS_1613) rplP 1593255..1593665 (+) 411 WP_006249357.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24705.70 Da        Isoelectric Point: 9.4406

>NTDB_id=32576 HAPS_RS07770 WP_005711167.1 1588060..1588698(-) (sxy/tfoX) [Glaesserella parasuis SH0165]
MKYIDAKTQHIRNLLYPIIGETKAKTYFSYYGIMKDKAMFALYKDDKFYLHIPNHCLEENIAKNLSLLLDSQTGINLKSF
YLIPPDLLNDLQQVSHWVVESVKDILHTKQNQYMEKKKCIRTLPNMTIQLERTLKKLGVYSIDDLVDRGEIDIFVNLLKI
GVDADQALLFRLHGAINRQYIYTISDKTKQNLLNDADNALYAAGLRKRFNTR

Nucleotide


Download         Length: 639 bp        

>NTDB_id=32576 HAPS_RS07770 WP_005711167.1 1588060..1588698(-) (sxy/tfoX) [Glaesserella parasuis SH0165]
ATGAAATACATTGATGCAAAAACACAACATATCCGTAATCTTCTTTACCCAATCATTGGCGAAACGAAAGCAAAAACCTA
TTTTTCCTATTATGGAATAATGAAAGATAAAGCTATGTTTGCTTTATACAAAGATGATAAATTCTATCTACACATACCAA
ATCATTGCTTAGAGGAAAACATAGCTAAAAATTTATCTCTTCTTCTCGACTCTCAGACTGGCATTAATCTAAAATCCTTC
TATTTAATCCCTCCCGATCTACTTAATGACTTACAACAAGTTTCACATTGGGTCGTCGAAAGTGTGAAAGATATTCTCCA
TACGAAACAAAATCAGTATATGGAAAAGAAAAAATGTATTCGGACGCTGCCGAATATGACAATACAACTCGAAAGGACAT
TAAAAAAACTAGGTGTCTACTCTATTGATGATTTAGTAGATAGAGGCGAGATTGATATTTTCGTCAACCTCCTTAAAATA
GGTGTTGATGCTGATCAAGCTTTATTATTTCGACTTCATGGAGCAATAAATCGACAATATATCTATACGATTTCAGACAA
AACAAAGCAGAATTTACTCAATGATGCAGATAATGCCTTGTATGCTGCTGGACTCCGAAAGCGATTTAATACTAGATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-103)

TfoX C-terminal domain (TfoX_C)

(118-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F752

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

73.239

100

0.736
  sxy/tfoX Actinobacillus suis H91-0380

43.128

99.528

0.429
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

38.647

97.642

0.377

Multiple sequence alignment