Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   IHMA87_RS09225 Genome accession   NZ_CP041354
Coordinates   1933707..1935719 (+) Length   670 a.a.
NCBI ID   WP_034078370.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AZPAE15042     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1928707..1940719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHMA87_RS09205 (IHMA87_01797) - 1929595..1931592 (+) 1998 WP_033977396.1 polysaccharide biosynthesis protein -
  IHMA87_RS09210 (IHMA87_01798) comE1/comEA 1931783..1932106 (+) 324 WP_003150898.1 ComEA family DNA-binding protein Machinery gene
  IHMA87_RS09220 (IHMA87_01800) - 1932324..1933520 (-) 1197 WP_012075040.1 amino acid aminotransferase -
  IHMA87_RS09225 (IHMA87_01801) uvrB 1933707..1935719 (+) 2013 WP_034078370.1 excinuclease ABC subunit UvrB Machinery gene
  IHMA87_RS09230 (IHMA87_01802) - 1935723..1937222 (-) 1500 WP_079383424.1 MDR family MFS transporter -
  IHMA87_RS09235 (IHMA87_01803) - 1937272..1938306 (-) 1035 WP_034078373.1 HlyD family secretion protein -
  IHMA87_RS09240 (IHMA87_01804) - 1938409..1939329 (+) 921 WP_034078374.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 76097.30 Da        Isoelectric Point: 5.0933

>NTDB_id=325587 IHMA87_RS09225 WP_034078370.1 1933707..1935719(+) (uvrB) [Pseudomonas aeruginosa strain AZPAE15042]
MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLAPNKTLAAQLYGEFKTFF
PHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHL
DRGDRIDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRAPGEP
PPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEA
EHAGRVIEQVVRPTGLVDPEIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDT
VERVEIIRDLRSGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADNVTGSMQ
RAIDETERRRAKQIAFNEAHGIVPKGVRRDIKDILEGAVVPGARGKRKGVAKVAEESGRYDNELRSPSEISKRIRQLEEK
MYQLARDLEFEAAAQLRDEIQTLRERLVNV

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=325587 IHMA87_RS09225 WP_034078370.1 1933707..1935719(+) (uvrB) [Pseudomonas aeruginosa strain AZPAE15042]
ATGGATACGTTCCAACTCGACTCGCGCTTCAAGCCCGCCGGCGACCAGCCGGAGGCCATCCGGCAGATGGTCGAGGGGTT
GGAGGCGGGGCTTTCGCACCAGACCCTGCTCGGAGTGACGGGGTCGGGCAAGACCTTCAGCATCGCCAACGTGATCGCCC
AGGTGCAGCGCCCGACCCTGGTCCTGGCGCCGAACAAGACTCTGGCGGCCCAGCTCTACGGGGAGTTCAAGACGTTCTTT
CCGCATAATTCGGTGGAGTACTTCGTTTCCTACTACGACTACTACCAGCCGGAGGCCTACGTACCATCCTCCGATACCTA
TATCGAGAAGGACTCGTCGATAAACGACCACATCGAGCAGATGCGCCTGTCGGCGACCAAGGCGCTGCTCGAGCGGCCGG
ATGCGATCATCGTCGCCACCGTGTCGTCCATCTACGGCCTCGGCGACCCCGCCTCGTACCTGAAGATGGTCCTGCACCTG
GACCGCGGCGACCGCATCGACCAGCGTGAGCTGCTACGGCGCCTGACCAGCCTGCAGTACACCCGCAACGACATGGACTT
CGCCCGCGCGACCTTCCGTGTGCGTGGCGACGTGATCGACATTTTCCCGGCCGAATCCGATCTCGAGGCGATCCGTGTCG
AGCTGTTCGACGACGAGGTGGAAAGTCTCTCGGCCTTCGACCCGCTCACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC
ACCTTCTACCCCAAGAGCCACTACGTGACTCCGCGCGAGACGCTGCTGGAGGCGGTCGACCAGATCAAAGCCGAACTCAA
GGAACGCCTGGACTACCTGCGCAACAACAATAAGCTGGTGGAAGCGCAGCGCCTGGAGCAGCGCACGCGTTTCGACCTGG
AGATGATCCTCGAACTGGGCTACTGCAACGGCATCGAGAACTATTCGCGCTACCTTTCCGGGCGCGCCCCCGGCGAGCCG
CCGCCAACGCTCTATGACTACCTGCCGGCCAACTCGCTGCTGGTTATCGACGAATCGCACGTCAGCGTTCCGCAGGTCGG
CGCGATGTTCAAGGGCGACCGCTCGCGCAAGGAAACCCTGGTGGAATACGGTTTCCGTCTGCCTTCGGCTTTGGACAACC
GGCCGCTGCGCTTCGAAGAGTGGGAGGCGGTGAGTCCGCAGACCATCTTCGTTTCCGCGACCCCCGGGCCCTACGAGGCG
GAGCACGCCGGGCGGGTCATCGAACAGGTGGTACGACCCACCGGCCTGGTCGATCCGGAGATCGAGGTGCGCCCGGCGAT
GACCCAGGTCGACGACCTGCTGTCGCAGATCCGCCAGCGCGTGGCCAAGGACGAGCGGGTGCTGGTGACCACCCTGACCA
AGCGCATGGCCGAAGACCTCACCGATTATCTCGGCGATCACGACGTGCGGGTCCGCTACCTGCACTCGGACATCGATACC
GTCGAGCGGGTGGAGATCATCCGCGACCTGCGCTCCGGTGCCTTCGACGTGCTGGTGGGAATCAACCTCCTGCGCGAGGG
CCTGGACATGCCGGAGGTATCGCTGGTGGCGATCCTCGACGCGGACAAGGAAGGTTTCCTGCGCTCGGAGCGCTCGCTGA
TCCAGACCATCGGTCGTGCCGCGCGCAACCTGCACGGCAAGGCGATTCTTTACGCCGACAACGTCACCGGCTCGATGCAG
CGCGCGATCGACGAGACCGAGCGGCGGCGGGCCAAGCAGATCGCCTTCAACGAAGCCCACGGCATCGTGCCCAAGGGTGT
GCGCAGGGACATCAAGGACATCCTCGAGGGCGCGGTGGTGCCCGGCGCGCGCGGCAAGCGCAAGGGCGTGGCCAAGGTCG
CGGAGGAGAGCGGGCGCTACGACAACGAACTGCGTTCGCCGAGCGAGATCAGCAAGCGCATCCGCCAGCTGGAGGAAAAG
ATGTACCAGTTGGCTCGCGACCTGGAGTTCGAAGCCGCGGCGCAACTGCGCGACGAGATCCAGACGCTGCGCGAGCGCCT
GGTCAACGTCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(550-591)

UvrB interaction domain (UvrB_inter)

(158-248)

UvrB/uvrC motif (UVR)

(632-665)

Helicase conserved C-terminal domain (Helicase_C)

(435-542)

Type III restriction enzyme, res subunit (ResIII)

(11-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.839

98.06

0.567
  uvrB Streptococcus pneumoniae R6

57.839

98.06

0.567
  uvrB Streptococcus pneumoniae D39

57.839

98.06

0.567