Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IHMA87_RS03270 Genome accession   NZ_CP041354
Coordinates   672915..673559 (-) Length   214 a.a.
NCBI ID   WP_003085214.1    Uniprot ID   A0A0H2ZLY6
Organism   Pseudomonas aeruginosa strain AZPAE15042     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 667915..678559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHMA87_RS03235 (IHMA87_00622) - 668771..669400 (+) 630 WP_034079709.1 glycoside hydrolase family 19 protein -
  IHMA87_RS03240 (IHMA87_00623) - 669397..669759 (+) 363 WP_034079723.1 hypothetical protein -
  IHMA87_RS03245 (IHMA87_00624) - 669756..670013 (+) 258 WP_033999480.1 hypothetical protein -
  IHMA87_RS03255 (IHMA87_00625) - 670364..670969 (+) 606 WP_003150133.1 aminodeoxychorismate/anthranilate synthase component II -
  IHMA87_RS03260 (IHMA87_00626) trpD 670971..672020 (+) 1050 WP_012074210.1 anthranilate phosphoribosyltransferase -
  IHMA87_RS03265 (IHMA87_00627) trpC 672017..672853 (+) 837 WP_003150132.1 indole-3-glycerol phosphate synthase TrpC -
  IHMA87_RS03270 (IHMA87_00628) crp 672915..673559 (-) 645 WP_003085214.1 cAMP-activated global transcriptional regulator CRP Regulator
  IHMA87_RS03275 (IHMA87_00629) - 673831..674253 (+) 423 WP_003085219.1 OsmC family protein -
  IHMA87_RS03280 (IHMA87_00630) speD 674573..675367 (+) 795 WP_003150131.1 adenosylmethionine decarboxylase -
  IHMA87_RS03285 (IHMA87_00631) coq7 675432..676079 (-) 648 WP_012074213.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  IHMA87_RS03290 (IHMA87_00632) - 676183..676521 (-) 339 WP_034079710.1 histidine triad nucleotide-binding protein -
  IHMA87_RS03295 (IHMA87_00633) - 676597..678078 (+) 1482 WP_003150128.1 AAA family ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24225.01 Da        Isoelectric Point: 8.0525

>NTDB_id=325573 IHMA87_RS03270 WP_003085214.1 672915..673559(-) (crp) [Pseudomonas aeruginosa strain AZPAE15042]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=325573 IHMA87_RS03270 WP_003085214.1 672915..673559(-) (crp) [Pseudomonas aeruginosa strain AZPAE15042]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTCGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGACCGCTGCGAAACGCTGTTTTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGCTTGTTCGAAAAG
GAAGGCAGCGAACAGGAGCGCAGCGCCTGGGTTCGCGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTACGCGAAGTT
CCGCGAACTCTCGCAGCAGGATTCCGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTCGGCGACCTGGCCTTCCTCGACGTCACCGGTCGCGTCGCCCGCACCCTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCCGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAGAT
GGTCGGCCGCGTGCTCAAGAGCCTGGAGGAACAGGGCCTGGTGCACGTGAAGGGCAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505