Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   EGX83_RS13730 Genome accession   NZ_CP033768
Coordinates   2870213..2871031 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain FDAARGOS_533     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2865213..2876031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX83_RS13715 (EGX83_13710) pilE 2865430..2865855 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  EGX83_RS13720 (EGX83_13715) pilY2 2865852..2866334 (-) 483 WP_032058632.1 type IV pilin protein Machinery gene
  EGX83_RS13725 (EGX83_13720) pilY1 2866347..2870201 (-) 3855 WP_188199216.1 PilC/PilY family type IV pilus protein Machinery gene
  EGX83_RS13730 (EGX83_13725) pilX 2870213..2871031 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EGX83_RS13735 (EGX83_13730) pilW 2871028..2872029 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  EGX83_RS13740 (EGX83_13735) pilV 2872030..2872590 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  EGX83_RS13745 (EGX83_13740) fimU 2872584..2873057 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGX83_RS13750 (EGX83_13745) ispH 2873227..2874177 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EGX83_RS13755 (EGX83_13750) gmk 2874300..2874929 (+) 630 WP_000015937.1 guanylate kinase -
  EGX83_RS13760 (EGX83_13755) rpoZ 2875002..2875280 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EGX83_RS13765 (EGX83_13760) - 2875319..2875449 (+) 131 Protein_2677 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=325556 EGX83_RS13730 WP_000149376.1 2870213..2871031(-) (pilX) [Acinetobacter baumannii strain FDAARGOS_533]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=325556 EGX83_RS13730 WP_000149376.1 2870213..2871031(-) (pilX) [Acinetobacter baumannii strain FDAARGOS_533]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment