Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   EGX83_RS00265 Genome accession   NZ_CP033768
Coordinates   68670..69080 (+) Length   136 a.a.
NCBI ID   WP_002125991.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain FDAARGOS_533     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 63670..74080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX83_RS00250 (EGX83_00250) - 64659..66965 (+) 2307 WP_002125975.1 RelA/SpoT family protein -
  EGX83_RS00255 (EGX83_00255) - 67010..67783 (-) 774 Protein_50 SDR family oxidoreductase -
  EGX83_RS00260 (EGX83_00260) mazG 67895..68701 (+) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  EGX83_RS00265 (EGX83_00265) comEA 68670..69080 (+) 411 WP_002125991.1 ComEA family DNA-binding protein Machinery gene
  EGX83_RS00270 (EGX83_00270) pcnB 69205..70668 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  EGX83_RS00275 (EGX83_00275) folK 70665..71147 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  EGX83_RS00280 (EGX83_00280) panB 71193..72002 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  EGX83_RS00285 (EGX83_00285) panC 72006..72854 (+) 849 WP_002125983.1 pantoate--beta-alanine ligase -
  EGX83_RS00290 (EGX83_00290) rapZ 72877..73728 (+) 852 WP_000821671.1 RNase adapter RapZ -
  EGX83_RS00295 (EGX83_00295) - 73725..73994 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15672.97 Da        Isoelectric Point: 10.4475

>NTDB_id=325536 EGX83_RS00265 WP_002125991.1 68670..69080(+) (comEA) [Acinetobacter baumannii strain FDAARGOS_533]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=325536 EGX83_RS00265 WP_002125991.1 68670..69080(+) (comEA) [Acinetobacter baumannii strain FDAARGOS_533]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404

Multiple sequence alignment