Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FLK62_RS12555 Genome accession   NZ_CP041334
Coordinates   2467607..2469688 (-) Length   693 a.a.
NCBI ID   WP_016528648.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS412     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2462607..2474688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLK62_RS12525 (FLK62_12665) - 2464240..2464998 (-) 759 WP_176443977.1 DeoR family transcriptional regulator -
  FLK62_RS12530 (FLK62_12670) - 2465134..2465457 (-) 324 WP_010786440.1 AzlD domain-containing protein -
  FLK62_RS12535 (FLK62_12675) - 2465457..2466149 (-) 693 WP_160413199.1 AzlC family ABC transporter permease -
  FLK62_RS12540 (FLK62_12680) - 2466235..2466321 (-) 87 WP_071610592.1 lipoprotein -
  FLK62_RS12545 (FLK62_12685) - 2466585..2466842 (-) 258 WP_016528650.1 hypothetical protein -
  FLK62_RS12550 (FLK62_12690) - 2466927..2467322 (-) 396 WP_176443978.1 YgiW/YdeI family stress tolerance OB fold protein -
  FLK62_RS12555 (FLK62_12695) recG 2467607..2469688 (-) 2082 WP_016528648.1 ATP-dependent DNA helicase RecG Machinery gene
  FLK62_RS12560 (FLK62_12700) - 2469801..2471006 (-) 1206 WP_159180023.1 cupin domain-containing protein -
  FLK62_RS12565 (FLK62_12705) - 2471082..2471870 (-) 789 WP_160433381.1 BPL-N domain-containing protein -
  FLK62_RS12570 (FLK62_12710) - 2471953..2472519 (+) 567 WP_021115349.1 biotin transporter BioY -
  FLK62_RS12575 (FLK62_12715) - 2472650..2473459 (-) 810 WP_005711109.1 Cof-type HAD-IIB family hydrolase -
  FLK62_RS12580 (FLK62_12720) - 2473583..2474260 (+) 678 WP_010786434.1 DNA utilization protein GntX -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77261.39 Da        Isoelectric Point: 8.4374

>NTDB_id=325473 FLK62_RS12555 WP_016528648.1 2467607..2469688(-) (recG) [Glaesserella parasuis strain HPS412]
MNQQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPLRYEDRTRITPIADVRPESFATVEGFVQLTEVQFGRRPI
LSTTISDGTSKITLKFFNFNAGMKNSLATGVRVKAFGEIKRGRFMAEMHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQ
ASLRKLTDQALALLERVQVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQQVR
MGVQQHFAEPLCYQTDLKQRFLATLPFQPTNAQSRVTAEIEQDLAKPFPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDQVEFNNLALVIIDEQH
RFGVHQRLTLREKGAKGDVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAEFKAADIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLMYKAPLGKISTKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQ
TGMAEFKIANLMRDRKMIPLVQSYAKQLTLKYPDTAKQLIRRWLDEKTVYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=325473 FLK62_RS12555 WP_016528648.1 2467607..2469688(-) (recG) [Glaesserella parasuis strain HPS412]
ATGAACCAACAACTATTAGACGGTGTACCGCTAACCGCCCTTTCGGGTGTTGGGGCGGCGATTTCAGAGAAACTCAGTCG
GATCGGCATTAATAACGTGCAAGATCTGCTATTCCATTTGCCGCTACGGTATGAAGACCGTACTCGGATCACGCCGATTG
CCGATGTTCGTCCTGAAAGTTTTGCGACGGTTGAAGGCTTTGTGCAACTGACGGAAGTACAATTCGGTCGTCGCCCGATT
TTAAGTACCACGATTTCTGACGGCACGAGCAAAATTACTCTGAAATTCTTTAATTTCAATGCGGGAATGAAAAATAGTCT
GGCGACTGGCGTAAGGGTCAAAGCCTTTGGTGAGATTAAACGTGGTCGCTTTATGGCAGAAATGCATCACCCTGAATATC
AAATTATTCGGGGAAATCAACCGCTTGAGCTGGCAGAAACATTAACACCGATTTACCCGACAACCGAAGGCTTGAAGCAA
GCCTCTTTGCGTAAATTAACCGATCAAGCCTTAGCGTTACTTGAGCGTGTGCAAGTGGCAGAATTGCTTCCCGATGAATT
TAATCCACACAAATATAGCTTAAAAGAAGCCTTACAGTTGTTGCATCGACCGCCGCCGAGTGTGTCGTCCGAATTATTAG
ATAAAGGCGAACACCCTGCACAAAAACGACTGATTTTTGAAGAGTTGTTGGCACATAATTTGGCAATGCAACAGGTGCGA
ATGGGCGTGCAACAACACTTTGCTGAACCGCTATGTTATCAAACCGATTTAAAACAACGCTTTTTGGCGACTTTGCCGTT
TCAGCCGACTAACGCCCAAAGTCGTGTAACCGCAGAGATTGAACAGGATTTGGCGAAACCTTTCCCGATGATGCGACTGG
TGCAAGGCGATGTGGGTTCAGGCAAAACCCTTGTGGCAGCCTTGGCAGCACTGCTGGCGATTGACAATGGTAAACAGGTG
GCGTTAATGGCACCGACCGAAATTCTCGCCGAGCAACACGCCCATAATTTTGCCAACTGGCTACGACCTTTTGGGATCGA
AGTGGGCTGGTTAGCTGGCAAAGTGAAAGGTAAAGCGAGAACGGCACAGTTGGAAGCGATTAAAAATGGCGATGTTCAGA
TGATTATCGGCACGCACGCCCTGTTTCAAGATCAGGTCGAGTTCAATAATTTGGCGTTGGTGATTATTGATGAACAGCAC
CGCTTCGGAGTGCATCAGCGTTTAACCTTACGCGAGAAAGGGGCGAAGGGCGATGTCTATCCGCACCAGTTGATTATGAC
CGCAACGCCTATTCCACGCACCTTAGCGATGACTGTCTATGCGGATTTGGATACGTCCATTATTGACGAACTTCCCCCAG
GGCGAACGCCGATTACGACGGTGGCGATTTCAGAAGATCGCCGAGATGAAGTGGTTCGCCGTGTTTATCAAGCCTGTAAA
AATGAAAAACGCCAAGCCTATTGGGTCTGTACGCTAATTGATGAGTCGGAAGTATTGGAAGCACAAGCGGCAGCGGCGAT
TGCCGAAGATTTGCAACGAGCCTTGCCAGATTTGCGGATTGGCTTGGTTCACGGGCGAATGAAACCGCAAGAAAAACAGG
CGATTATGGCGGAATTTAAGGCGGCAGATATTGATTTGTTAGTCGCAACAACAGTGATTGAAGTCGGCGTAGATGTGCCG
AATGCCAGTTTGATGATTATCGAAAATTCCGAACGCTTGGGGCTGGCACAGTTGCACCAACTGCGTGGGCGTGTCGGGCG
TGGGGCGACGGCTTCCCATTGTGTCTTGATGTACAAAGCCCCATTGGGTAAAATTTCAACTAAGCGTTTACAGGTGCTGA
GAGATAGCCAAGATGGCTTTGTGATTGCTGAAAAAGATTTGGAAATTCGAGGACCAGGCGAAGTGCTAGGCACAAAACAG
ACGGGAATGGCAGAGTTCAAGATTGCAAATTTAATGCGAGATCGTAAGATGATCCCGTTGGTGCAGAGCTACGCTAAACA
GCTAACGTTAAAATATCCCGATACAGCTAAACAGCTAATTCGCCGTTGGCTTGATGAAAAGACGGTTTATAGTAATGCGT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(16-172)

Helicase conserved C-terminal domain (Helicase_C)

(475-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-674)

DEAD/DEAH box helicase (DEAD)

(293-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.481

97.403

0.482
  recG Bacillus subtilis subsp. subtilis str. 168

39.794

98.268

0.391
  recG/mmsA Streptococcus pneumoniae R6

39.482

94.661

0.374
  recG/mmsA Streptococcus pneumoniae R36A

39.482

94.661

0.374