Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FLK62_RS03000 Genome accession   NZ_CP041334
Coordinates   610519..612534 (+) Length   671 a.a.
NCBI ID   WP_176443474.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS412     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 605519..617534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLK62_RS02985 (FLK62_03010) - 605746..606777 (-) 1032 WP_021113358.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  FLK62_RS02990 (FLK62_03015) - 606790..607680 (-) 891 WP_021110465.1 ABC transporter permease subunit -
  FLK62_RS02995 (FLK62_03020) glnD 607764..610358 (-) 2595 WP_235685070.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD -
  FLK62_RS03000 (FLK62_03025) uvrB 610519..612534 (+) 2016 WP_176443474.1 excinuclease ABC subunit UvrB Machinery gene
  FLK62_RS03005 (FLK62_03030) - 612579..613034 (-) 456 WP_005710562.1 YcgN family cysteine cluster protein -
  FLK62_RS03010 (FLK62_03035) - 613034..613219 (-) 186 WP_075605364.1 heavy metal-binding domain-containing protein -
  FLK62_RS03015 (FLK62_03040) - 613227..613820 (-) 594 WP_075605395.1 XTP/dITP diphosphatase -
  FLK62_RS03020 (FLK62_03045) - 613942..614880 (-) 939 WP_276529533.1 Kdo(2)-lipid IV(A) acyltransferase -
  FLK62_RS03025 (FLK62_03050) - 614877..615191 (-) 315 WP_234888258.1 DUF4298 domain-containing protein -
  FLK62_RS03030 (FLK62_03055) raiA 615361..615687 (+) 327 WP_005710552.1 ribosome-associated translation inhibitor RaiA -
  FLK62_RS03035 (FLK62_03060) - 615937..616588 (-) 652 Protein_574 IS1595 family transposase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 76605.52 Da        Isoelectric Point: 5.3488

>NTDB_id=325434 FLK62_RS03000 WP_176443474.1 610519..612534(+) (uvrB) [Glaesserella parasuis strain HPS412]
MSKQGKPFILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMVLAPNKTLAAQLYAEM
KAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
MLHLQVGEMIDQRKILSRLAELQYTRNDQAFQRATFRVRGEVIDIFPAESDDVALRVELFDDEIENLSLFDPLTGHSLGR
VPRYTIYPKTHYVTPRERILEAIEQIKKELAERRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRK
EGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLSPQTIYVSATPG
PYELEKNPDVIDQVVRPTGLLDPIIEVRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHS
DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRIT
NSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLDIGQTDKPKRSKKSAKSSDDQTAYIPKTRKELEKELKVLEQ
QMRDFAKDLEFEKAAAVRDKIHQLKAYLLEL

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=325434 FLK62_RS03000 WP_176443474.1 610519..612534(+) (uvrB) [Glaesserella parasuis strain HPS412]
ATGAGCAAACAGGGTAAACCATTTATTTTACATTCCCCCTTCAAACCCTCAGGCGACCAACCGACTGCGATTGCCAAATT
AGTCGAGGGATTGAATGATGGCTTGGCACATCAAACCTTGCTAGGTGTAACAGGATCGGGCAAAACCTTTACCATTGCCA
ATGTGATTGCGACTTTAAACCGTCCAGCAATGGTACTTGCCCCGAACAAAACCCTTGCGGCACAACTTTATGCCGAGATG
AAAGCCTTTTTCCCTGAAAATGCGGTGGAGTATTTCGTTTCCTACTACGATTACTATCAGCCCGAAGCCTATGTGCCTGC
TAGCGATACTTTTATTGAAAAAGATGCCTCTATTAATGAACAGATCGAACAGATGCGACTGTCTGCCACCAAATCTTTTT
TAGAAAGACGGGATACGATTGTAGTCGCATCGGTGTCGGCAATTTACGGCTTGGGAGATGTAGATGCCTATATGCAGATG
ATGTTACATCTGCAAGTGGGGGAAATGATCGACCAACGCAAAATTCTCTCTCGCCTTGCTGAATTACAATATACTCGTAA
CGATCAAGCCTTTCAGCGGGCGACTTTCCGTGTGCGTGGCGAAGTGATTGATATTTTCCCTGCCGAATCGGACGATGTTG
CTCTGCGTGTGGAGCTGTTTGATGATGAAATCGAAAACCTTTCTTTATTCGATCCGCTTACAGGACATAGTTTAGGGCGT
GTTCCCCGTTATACAATCTACCCGAAAACCCACTACGTTACGCCGAGAGAGCGGATTTTAGAGGCGATTGAGCAGATTAA
AAAAGAGCTTGCCGAGCGTCGAACTTACTTTATCAAAGAGAATAAATTGCTTGAAGAACAGCGGATCGCCCAGCGTACTC
AGTTTGATATTGAGATGATGAACGAGTTGGGCTACTGCTCAGGCATTGAAAACTACTCACGTTATTTATCGGGCAGAAAA
GAGGGTGAACCGCCACCGACCTTGTTTGACTATATGCCGTCTGATGGCTTGCTGATTATTGATGAGTCCCACGTCACCGT
GCCACAAATCGGCGGTATGTTTAGGGGAGACCGAGCAAGAAAAGAAACTTTGGTGCAATACGGCTTCCGCTTGCCGTCCG
CTTTGGATAACCGTCCGTTACGTTTTGAAGAGTTTGAACGCTTATCGCCACAGACAATCTATGTATCGGCAACCCCTGGA
CCTTACGAATTAGAGAAAAATCCTGATGTGATCGACCAAGTGGTTCGCCCGACTGGTTTGTTAGATCCGATTATCGAAGT
TCGCCCTGTGGCAACGCAAGTTGATGATTTATTGTCAGAAATTCATAAGCGTGTGGCGGTAGATGAACGAGTGCTAGTCA
CCACGCTGACAAAAAAAATGGCGGAAGATTTAACGGACTACCTAGACGAACACGGCGTACGAGTGCGTTATCTACATAGC
GATATTGACACAGTCGAGCGGGTTGAAATTATCCACGATTTGCGAATGGGAATGTTTGATGTGTTAGTGGGGATCAACCT
ACTGCGAGAAGGTTTGGATATGCCGGAAGTGTCGCTGGTGGCGATTTTAGACGCTGACAAAGAAGGCTTTTTGCGTTCCG
AACGCTCTTTAATCCAAACCATCGGGCGTGCTGCCCGAAACCTCAACGGCAAAGCGATTTTATACGGCGACCGTATTACC
AATTCAATGCAAAAAGCGATCACCGAAACTGAACGCCGTCGAGAGAAACAACAAAAATACAACGAAGAACACGGCATTGT
GCCACAAGCATTGAACAAAAAAGTCGGCGAGTTGCTTGATATTGGGCAGACGGATAAACCGAAACGCAGTAAGAAATCTG
CAAAATCAAGCGATGATCAGACCGCTTACATTCCGAAAACTCGCAAAGAGTTAGAAAAAGAACTGAAAGTGCTTGAACAA
CAGATGAGAGATTTTGCTAAAGATCTTGAGTTTGAAAAAGCGGCTGCGGTGAGGGATAAGATTCATCAGTTGAAGGCGTA
TTTGTTAGAACTTTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(437-546)

UvrB interaction domain (UvrB_inter)

(162-252)

UvrB/uvrC motif (UVR)

(632-666)

Ultra-violet resistance protein B (UvrB)

(554-595)

Type III restriction enzyme, res subunit (ResIII)

(17-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.663

98.212

0.566
  uvrB Streptococcus pneumoniae R6

57.663

98.212

0.566
  uvrB Streptococcus pneumoniae D39

57.663

98.212

0.566