Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EGX73_RS05710 Genome accession   NZ_CP033740
Coordinates   1098191..1098709 (+) Length   172 a.a.
NCBI ID   WP_003129252.1    Uniprot ID   A0A1V8Z0P0
Organism   Enterococcus sp. FDAARGOS_553     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1075143..1104133 1098191..1098709 within 0


Gene organization within MGE regions


Location: 1075143..1104133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX73_RS05585 (EGX73_05620) - 1075143..1076420 (+) 1278 WP_234755132.1 DNA cytosine methyltransferase -
  EGX73_RS05590 (EGX73_05625) - 1076525..1076962 (-) 438 WP_123866802.1 hypothetical protein -
  EGX73_RS05595 (EGX73_05630) - 1077270..1077596 (-) 327 WP_123866803.1 hypothetical protein -
  EGX73_RS05600 (EGX73_05635) - 1077634..1077999 (-) 366 WP_123866804.1 zinc ribbon domain-containing protein -
  EGX73_RS05605 (EGX73_05640) - 1078026..1078238 (-) 213 WP_123866805.1 helix-turn-helix transcriptional regulator -
  EGX73_RS05610 (EGX73_05645) - 1078366..1078695 (+) 330 WP_123866806.1 helix-turn-helix domain-containing protein -
  EGX73_RS05615 (EGX73_05650) - 1078719..1079432 (-) 714 WP_123866807.1 hypothetical protein -
  EGX73_RS05620 (EGX73_05655) - 1079742..1079999 (-) 258 WP_123866808.1 helix-turn-helix domain-containing protein -
  EGX73_RS05625 (EGX73_05660) - 1080262..1080861 (+) 600 WP_123866809.1 DNA-binding transcriptional regulator -
  EGX73_RS05630 (EGX73_05665) - 1080962..1082125 (+) 1164 WP_123866810.1 site-specific integrase -
  EGX73_RS05635 (EGX73_05670) mnmG 1082203..1084098 (-) 1896 WP_123866811.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  EGX73_RS05640 (EGX73_05675) mnmE 1084119..1085516 (-) 1398 WP_123866812.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  EGX73_RS05645 (EGX73_05680) - 1085740..1086069 (+) 330 WP_003129184.1 heavy metal-binding domain-containing protein -
  EGX73_RS05650 (EGX73_05685) jag 1086254..1087018 (-) 765 WP_003129185.1 RNA-binding cell elongation regulator Jag/EloR -
  EGX73_RS05655 (EGX73_05690) - 1087035..1087859 (-) 825 WP_003129186.1 membrane protein insertase YidC -
  EGX73_RS05660 (EGX73_05695) rnpA 1087878..1088213 (-) 336 WP_003129188.1 ribonuclease P protein component -
  EGX73_RS05665 (EGX73_05700) rpmH 1088335..1088469 (-) 135 WP_002356012.1 50S ribosomal protein L34 -
  EGX73_RS05675 (EGX73_05710) dnaA 1088979..1090316 (+) 1338 WP_003129244.1 chromosomal replication initiator protein DnaA -
  EGX73_RS05680 (EGX73_05715) dnaN 1090476..1091606 (+) 1131 WP_123866813.1 DNA polymerase III subunit beta -
  EGX73_RS05685 (EGX73_05720) yaaA 1091831..1092070 (+) 240 WP_003129246.1 S4 domain-containing protein YaaA -
  EGX73_RS05690 (EGX73_05725) recF 1092057..1093169 (+) 1113 WP_005473084.1 DNA replication/repair protein RecF -
  EGX73_RS05695 (EGX73_05730) gyrB 1093175..1095124 (+) 1950 WP_005473082.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  EGX73_RS05700 (EGX73_05735) gyrA 1095196..1097625 (+) 2430 WP_229073633.1 DNA gyrase subunit A -
  EGX73_RS05705 (EGX73_05740) rpsF 1097849..1098148 (+) 300 WP_003129251.1 30S ribosomal protein S6 -
  EGX73_RS05710 (EGX73_05745) ssb 1098191..1098709 (+) 519 WP_003129252.1 single-stranded DNA-binding protein Machinery gene
  EGX73_RS05715 (EGX73_05750) rpsR 1098733..1098969 (+) 237 WP_003129253.1 30S ribosomal protein S18 -
  EGX73_RS05720 (EGX73_05755) - 1099228..1100679 (+) 1452 WP_005473080.1 DHH family phosphoesterase -
  EGX73_RS05725 (EGX73_05760) rplI 1100693..1101145 (+) 453 WP_003129255.1 50S ribosomal protein L9 -
  EGX73_RS05730 (EGX73_05765) dnaB 1101267..1102637 (+) 1371 WP_003129256.1 replicative DNA helicase -
  EGX73_RS05735 (EGX73_05770) - 1102841..1104133 (+) 1293 WP_003129258.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18889.44 Da        Isoelectric Point: 4.7200

>NTDB_id=325314 EGX73_RS05710 WP_003129252.1 1098191..1098709(+) (ssb) [Enterococcus sp. FDAARGOS_553]
MINNVVLVGRLTKDPDLRYTANGTGVASFTLAVNRNFTNQSGEREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRNASEQRRTTESGGNTSYNTSGSSGFGNNSTNQNQSSQPSGMPNFDRDNSDPFGN
SSIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=325314 EGX73_RS05710 WP_003129252.1 1098191..1098709(+) (ssb) [Enterococcus sp. FDAARGOS_553]
TTGATTAATAATGTTGTATTAGTAGGAAGATTAACCAAAGATCCTGATTTACGATACACTGCTAACGGCACTGGCGTCGC
GTCTTTTACATTGGCTGTAAATCGTAATTTTACAAACCAAAGTGGAGAACGTGAAGCTGATTTCATCAATTGTGTGATTT
GGAGAAAACCTGCAGAAACACTGGCTAATTATGCTCGTAAGGGTACATTACTTGGTGTGACTGGAAGAATCCAAACACGT
TCTTATGACAATCAACAAGGACAACGTGTATATGTAACTGAAGTTGTAGCAGACAATTTTCAATTGTTAGAATCTCGAAA
TGCTTCTGAACAACGACGCACTACCGAAAGCGGTGGAAATACTTCGTATAATACTAGTGGTTCTTCTGGATTCGGAAACA
ATAGCACAAATCAAAATCAATCCTCTCAACCATCAGGAATGCCTAACTTTGATCGAGATAATTCTGATCCATTCGGAAAC
TCGTCAATTGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V8Z0P0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.471

100

0.581
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

61.628

0.384

Multiple sequence alignment