Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EGX68_RS00390 Genome accession   NZ_CP033735
Coordinates   43511..44023 (+) Length   170 a.a.
NCBI ID   WP_019469844.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain FDAARGOS_538     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 38511..49023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX68_RS00360 (EGX68_00360) - 38717..39085 (+) 369 WP_026034821.1 DUF2294 domain-containing protein -
  EGX68_RS00365 (EGX68_00365) - 39495..40379 (+) 885 WP_019469839.1 mechanosensitive ion channel family protein -
  EGX68_RS00370 (EGX68_00370) - 40400..40603 (+) 204 WP_019469840.1 DUF951 domain-containing protein -
  EGX68_RS00375 (EGX68_00375) ychF 40617..41714 (+) 1098 WP_019469841.1 redox-regulated ATPase YchF -
  EGX68_RS00380 (EGX68_00380) - 42000..42797 (-) 798 WP_019469842.1 GH25 family lysozyme -
  EGX68_RS00385 (EGX68_00385) rpsF 43187..43492 (+) 306 WP_019469843.1 30S ribosomal protein S6 -
  EGX68_RS00390 (EGX68_00390) ssbA 43511..44023 (+) 513 WP_019469844.1 single-stranded DNA-binding protein Machinery gene
  EGX68_RS00395 (EGX68_00395) rpsR 44073..44315 (+) 243 WP_002484306.1 30S ribosomal protein S18 -
  EGX68_RS00400 (EGX68_00400) - 44548..45474 (-) 927 WP_019469845.1 Abi family protein -
  EGX68_RS00405 (EGX68_00405) - 45475..46690 (-) 1216 Protein_44 tyrosine-type recombinase/integrase -
  EGX68_RS00410 (EGX68_00410) - 46834..47601 (-) 768 WP_019469849.1 hypothetical protein -
  EGX68_RS13415 - 47700..47837 (-) 138 WP_019469850.1 hypothetical protein -
  EGX68_RS13420 - 47848..47985 (-) 138 WP_019469851.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19061.59 Da        Isoelectric Point: 4.7482

>NTDB_id=325171 EGX68_RS00390 WP_019469844.1 43511..44023(+) (ssbA) [Staphylococcus cohnii strain FDAARGOS_538]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEENNNFQNFGGQQSGQNTSSYQNNNNNNNSSNNNQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=325171 EGX68_RS00390 WP_019469844.1 43511..44023(+) (ssbA) [Staphylococcus cohnii strain FDAARGOS_538]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCTGATTTCATTAACTGCGTTGTTT
TTAGAAAACAAGCAGAAAATGTAAATAACTACTTATTCAAAGGTAGTCTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTACGAAAACCAAGAAGGTCGTCGTATATTTGTAACTGAAGTTGTCTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CCAAAATCAGCGTCATGCTCAAGAAGAAAATAATAATTTCCAGAATTTTGGTGGACAACAATCCGGACAAAATACGTCTT
CTTATCAAAATAATAACAATAATAATAATTCATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCAAACGGCCCT
ATTGATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.372

100

0.641
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

64.706

0.382

Multiple sequence alignment