Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EGX58_RS00540 Genome accession   NZ_CP033732
Coordinates   79859..80731 (-) Length   290 a.a.
NCBI ID   WP_002455422.1    Uniprot ID   A0A974L0C4
Organism   Staphylococcus hominis strain FDAARGOS_575     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 74859..85731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX58_RS00525 (EGX58_00525) xerC 75320..76183 (-) 864 WP_233172112.1 tyrosine recombinase XerC -
  EGX58_RS00530 (EGX58_00530) trmFO 76319..77626 (-) 1308 WP_002448834.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EGX58_RS00535 (EGX58_00535) topA 77651..79720 (-) 2070 WP_049418187.1 type I DNA topoisomerase -
  EGX58_RS00540 (EGX58_00540) dprA 79859..80731 (-) 873 WP_002455422.1 DNA-processing protein DprA Machinery gene
  EGX58_RS00545 (EGX58_00545) sucD 80989..81894 (-) 906 WP_002448725.1 succinate--CoA ligase subunit alpha -
  EGX58_RS00550 (EGX58_00550) sucC 81916..83082 (-) 1167 WP_002448800.1 ADP-forming succinate--CoA ligase subunit beta -
  EGX58_RS00555 (EGX58_00555) - 83210..83977 (-) 768 WP_002455424.1 ribonuclease HII -
  EGX58_RS00560 (EGX58_00560) ylqF 83961..84845 (-) 885 WP_049336491.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33573.69 Da        Isoelectric Point: 8.9933

>NTDB_id=325138 EGX58_RS00540 WP_002455422.1 79859..80731(-) (dprA) [Staphylococcus hominis strain FDAARGOS_575]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHVQFEMINEWESLYLKKKRFTQLEEISYDYIQTQLSRSQVNYVTSF
SSQYPPLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATHYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYRFLNN

Nucleotide


Download         Length: 873 bp        

>NTDB_id=325138 EGX58_RS00540 WP_002455422.1 79859..80731(-) (dprA) [Staphylococcus hominis strain FDAARGOS_575]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGTTCAATTTGAAATGATTAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAGAAGAGATTTCTTACGATTACATTCAAACTCAACTTTCTAGATCTCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTCCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACATATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACACATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTCCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCACTATCCAAAGGAAACCCGAAAGTTACGTAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTATTACCTGGATCAATGTTTAACCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGTGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATCGTTTTTTAAACAATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.77

100

0.369

Multiple sequence alignment