Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FKM99_RS11525 Genome accession   NZ_CP041202
Coordinates   590875..591603 (-) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain Vb0624     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585875..596603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKM99_RS11500 (FKM99_11500) trpR 586256..586573 (+) 318 WP_140255283.1 trp operon repressor -
  FKM99_RS11505 (FKM99_11505) yjjX 586622..587155 (-) 534 WP_169567038.1 inosine/xanthosine triphosphatase -
  FKM99_RS11510 (FKM99_11510) pheA 587180..588358 (-) 1179 WP_005468591.1 prephenate dehydratase -
  FKM99_RS11515 (FKM99_11515) hpf 588602..588928 (-) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FKM99_RS11520 (FKM99_11520) - 589259..590740 (-) 1482 WP_323243679.1 lytic transglycosylase F -
  FKM99_RS11525 (FKM99_11525) comL 590875..591603 (-) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  FKM99_RS11530 (FKM99_11530) rluD 591740..592717 (+) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FKM99_RS11535 (FKM99_11535) pgeF 592719..593447 (+) 729 WP_025518860.1 peptidoglycan editing factor PgeF -
  FKM99_RS11540 (FKM99_11540) clpC 593595..596168 (+) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=325028 FKM99_RS11525 WP_005460312.1 590875..591603(-) (comL) [Vibrio parahaemolyticus strain Vb0624]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=325028 FKM99_RS11525 WP_005460312.1 590875..591603(-) (comL) [Vibrio parahaemolyticus strain Vb0624]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTCAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCAGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCTGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCACTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405