Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SMUNN2025_RS09405 Genome accession   NC_013928
Coordinates   1935613..1936206 (-) Length   197 a.a.
NCBI ID   WP_002266975.1    Uniprot ID   -
Organism   Streptococcus mutans NN2025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1930613..1941206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS10230 - 1930875..1931075 (-) 201 Protein_1816 hypothetical protein -
  SMUNN2025_RS09380 (SmuNN2025_1822) - 1931216..1931641 (-) 426 WP_002266116.1 hypothetical protein -
  SMUNN2025_RS09385 (SmuNN2025_1823) spx 1931892..1932290 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  SMUNN2025_RS09390 (SmuNN2025_1824) recA 1932375..1933526 (-) 1152 WP_002262392.1 recombinase RecA Machinery gene
  SMUNN2025_RS09395 (SmuNN2025_1825) cinA 1933566..1934822 (-) 1257 WP_002277468.1 competence/damage-inducible protein A Machinery gene
  SMUNN2025_RS09400 (SmuNN2025_1826) - 1934971..1935531 (-) 561 WP_002283270.1 DNA-3-methyladenine glycosylase I -
  SMUNN2025_RS09405 (SmuNN2025_1827) ruvA 1935613..1936206 (-) 594 WP_002266975.1 Holliday junction branch migration protein RuvA Machinery gene
  SMUNN2025_RS09410 (SmuNN2025_1828) hexB 1936391..1938346 (-) 1956 WP_002287711.1 DNA mismatch repair endonuclease MutL Machinery gene
  SMUNN2025_RS10235 - 1938571..1938849 (+) 279 Protein_1824 transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21866.09 Da        Isoelectric Point: 5.6313

>NTDB_id=32467 SMUNN2025_RS09405 WP_002266975.1 1935613..1936206(-) (ruvA) [Streptococcus mutans NN2025]
MYDYIKGNLTKITAKYIVLEAGGLGYVINVANPYSFSNQINQAIQIYIHHVVREDAHLLYGFHTEDEKAVFLNLISVSGI
GPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKTAQQMVLDLAGKFVDINEVSTDKSKVSTINNNQELEEAVEAL
LALGYKTNELKKIEKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=32467 SMUNN2025_RS09405 WP_002266975.1 1935613..1936206(-) (ruvA) [Streptococcus mutans NN2025]
ATGTACGATTATATTAAAGGGAATTTAACCAAAATTACAGCTAAATATATTGTTTTAGAAGCTGGCGGTTTGGGTTATGT
AATTAATGTTGCCAATCCTTATAGTTTTTCTAATCAGATAAATCAAGCTATTCAAATTTATATTCACCATGTTGTCCGTG
AAGATGCCCATCTTCTTTATGGTTTTCATACTGAGGATGAAAAGGCGGTTTTTCTTAATCTTATCTCTGTTTCAGGAATC
GGTCCAACTTCAGCATTAGCTATTATTGCGGCTGATGATAATGAAGGTTTGGTTAAAGCTATTGACCACAGTGATGTAAA
CTATTTGATGAAATTCCCTAAAATTGGGAAGAAAACAGCTCAACAAATGGTGCTTGATTTAGCAGGTAAATTTGTAGATA
TTAATGAAGTCTCAACTGATAAAAGCAAAGTGAGCACTATTAATAATAATCAAGAACTTGAAGAGGCGGTTGAAGCACTT
TTGGCTCTTGGTTACAAAACAAATGAACTTAAGAAGATAGAAAAATTTTTTGAAGGAACGACTGATACGGCAGAAAATTA
TATTAAATCTGCTCTAAAAATGTTGATGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(153-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

71.574

100

0.716
  ruvA Streptococcus pneumoniae D39

71.574

100

0.716
  ruvA Streptococcus pneumoniae TIGR4

71.574

100

0.716
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411

Multiple sequence alignment