Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FIM01_RS05475 Genome accession   NZ_CP041035
Coordinates   1099954..1101975 (+) Length   673 a.a.
NCBI ID   WP_139893784.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 11W359501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1094954..1106975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM01_RS05450 (FIM01_05450) - 1095253..1095663 (+) 411 WP_001014257.1 GFA family protein -
  FIM01_RS05455 (FIM01_05455) - 1095715..1096950 (-) 1236 WP_000383202.1 pyridoxal phosphate-dependent aminotransferase -
  FIM01_RS05460 (FIM01_05460) - 1097158..1097337 (+) 180 WP_000139632.1 hypothetical protein -
  FIM01_RS05465 (FIM01_05465) - 1097372..1098808 (-) 1437 WP_000448849.1 diguanylate cyclase domain-containing protein -
  FIM01_RS05470 (FIM01_05470) - 1098983..1099774 (-) 792 WP_000222202.1 hypothetical protein -
  FIM01_RS05475 (FIM01_05475) uvrB 1099954..1101975 (+) 2022 WP_139893784.1 excinuclease ABC subunit UvrB Machinery gene
  FIM01_RS05480 (FIM01_05480) - 1102069..1102656 (+) 588 WP_000885644.1 lipocalin family protein -
  FIM01_RS05485 (FIM01_05485) rarD 1102765..1103712 (+) 948 WP_161283637.1 EamA family transporter RarD -
  FIM01_RS05490 (FIM01_05490) - 1103929..1105386 (+) 1458 WP_000031228.1 glyceraldehyde-3-phosphate dehydrogenase -
  FIM01_RS05495 (FIM01_05495) - 1105536..1106270 (+) 735 WP_001183836.1 hypothetical protein -
  FIM01_RS05500 (FIM01_05500) - 1106282..1106956 (+) 675 WP_000468065.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77294.03 Da        Isoelectric Point: 5.3381

>NTDB_id=324579 FIM01_RS05475 WP_139893784.1 1099954..1101975(+) (uvrB) [Acinetobacter baumannii strain 11W359501]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAR
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADTITD
SMRKAIDETERRRTKQIEFNEQHGITPRSAVRQAVKEIDTGEVLSDDQIDEKVLEQAQALSADERHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKGQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=324579 FIM01_RS05475 WP_139893784.1 1099954..1101975(+) (uvrB) [Acinetobacter baumannii strain 11W359501]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
GAATGGTATCGAAAAGGGTTTTCGTAATCAGTTACTGCTAGGCGTGACCGGTTCAGGTAAGACCTATACCATGGCAAATG
TGATTGCCCAAACTCAGCGTCCGACGATTGTGATGGCGCATAATAAGACCTTGGCAGCCCAGCTCTATGGTGAGTTTAAA
GCCTTCTTCCCAAACAATGCAGTTGAGTATTTCGTAAGTTATTACGACTACTATCAACCCGAGGCTTATGTTCCGTCGTC
AGATACATTTATTGAAAAAGACGCGGCAATTAATGACCATATTGACCAGATGCGATTATCGGCAACGCGTGCTTTGTTAG
AACGTCGTGATGCGATTATTGTTGCTTCTGTTTCGGCCATTTATGGTTTGGGTGACCCAAATGCTTATATGCAAATGTTA
TTGCATGTGGTCCAAGGTGACCGAGTAAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACGCGTAATGA
GCTTGAATTCTTACGTGGTACGTATCGTATCCGTGGTGAAATTATTGATATTTTCCCGGCAGAATCCGACCAACATGCGA
TTCGTATTGAACTCTTTGATGACGAAGTAGACTCAATTCGCTGGTTTGATCCGCTGACCGGTAAAATGGTCCGCAAAGTA
CCACGTGTCACGATTTACCCGAAAAGCCATTATGTGACGCCAAAAGACAACCTAACACGCGCTATCGATACTATTAAGGA
TGAATTGCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTACTCGAAGCGCAGCGTATCGAGCAACGTACGCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGATACACCAATGGTATCGAAAACTACTCACGTCATTTATCGGGACGACCAGCA
GGGGAAGCACCACCGACTTTATTTGACTATGTACCAGAAGATGCCTTACTTATTATCGATGAGTCGCATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCGCGTAAAGAAAACTTGGTGAATTACGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAGCGTATTGTTCCGACCACTATTTTTGTGAGTGCCACACCAGCTAGA
TATGAACTGGAAAAATCAGAACAAGTGGTTGAGCAGGTTGTTCGACCAACAGGCTTGATTGATCCTGAAATTGAAGTTCG
TCCGGTGCTTACCCAAGTCGATGATGTTTTGTCTGAGATTAATATTCGTAAGAACTTAAATGAGCGTGTATTGGTAACGA
CTTTAACCAAGCGTATGGCGGAAGATTTAACTTCTTATTTAAAAGAATATGGCGTTAAGGTTGCTTATCTGCACTCGGAT
ATTGATACAGTTGAACGTGTCAAAATTATTCATGAATTACGTACAGGCGTATTTGATGTACTAGTGGGTATTAACTTGCT
GCGAGAAGGCTTAGATATGCCGGAAGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAAGGTTTCTTACGTTCTGAGC
GTTCGCTTATTCAGACGATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAAGCAATTTTATATGCTGATACAATCACTGAT
TCTATGCGAAAGGCAATTGATGAGACAGAGCGCCGACGTACAAAACAAATCGAGTTTAATGAGCAGCATGGTATTACACC
ACGTAGTGCAGTTCGTCAGGCTGTGAAAGAAATTGATACGGGTGAAGTACTTTCTGATGATCAGATTGATGAGAAAGTAC
TAGAGCAGGCACAAGCACTTAGCGCAGATGAACGACATATTCTTTCTGACCCTAAATTGTTTAGTAAGCACATTACTAAG
CTAGAGAAAGAAATGTTAAAGGCGTCGAAGGATTTACAATTCGAGCAAGCGGCGCGTATTCGTGATGAAATTGTTCGTTT
AAAAGGGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(638-670)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

UvrB interaction domain (UvrB_inter)

(161-251)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.848

99.406

0.575
  uvrB Streptococcus pneumoniae R6

57.848

99.406

0.575
  uvrB Streptococcus pneumoniae D39

57.848

99.406

0.575

Multiple sequence alignment