Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FIU18_RS23610 Genome accession   NZ_CP041008
Coordinates   5017223..5017867 (+) Length   214 a.a.
NCBI ID   WP_096067548.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain FDAARGOS_767     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5012223..5022867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU18_RS23585 (FIU18_23585) - 5012715..5014196 (-) 1482 WP_003113173.1 AAA family ATPase -
  FIU18_RS23590 (FIU18_23590) - 5014275..5014613 (+) 339 WP_003085225.1 histidine triad nucleotide-binding protein -
  FIU18_RS23595 (FIU18_23595) coq7 5014713..5015360 (+) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  FIU18_RS23600 (FIU18_23600) speD 5015415..5016209 (-) 795 WP_003101641.1 adenosylmethionine decarboxylase -
  FIU18_RS23605 (FIU18_23605) - 5016529..5016951 (-) 423 WP_003085219.1 OsmC family protein -
  FIU18_RS23610 (FIU18_23610) crp 5017223..5017867 (+) 645 WP_096067548.1 cAMP-activated global transcriptional regulator CRP Regulator
  FIU18_RS23615 (FIU18_23615) trpC 5017929..5018765 (-) 837 WP_003113174.1 indole-3-glycerol phosphate synthase TrpC -
  FIU18_RS23620 (FIU18_23620) trpD 5018762..5019811 (-) 1050 WP_003085203.1 anthranilate phosphoribosyltransferase -
  FIU18_RS23625 (FIU18_23625) - 5019813..5020418 (-) 606 WP_003113175.1 aminodeoxychorismate/anthranilate synthase component II -
  FIU18_RS23630 (FIU18_23630) - 5020837..5021067 (-) 231 WP_003113176.1 hypothetical protein -
  FIU18_RS23635 (FIU18_23635) - 5021064..5021366 (-) 303 WP_003113177.1 hypothetical protein -
  FIU18_RS23640 (FIU18_23640) - 5021366..5022418 (-) 1053 WP_003113178.1 pyocin knob domain-containing protein -
  FIU18_RS23645 (FIU18_23645) - 5022514..5022744 (-) 231 WP_010895513.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24237.07 Da        Isoelectric Point: 8.0525

>NTDB_id=324204 FIU18_RS23610 WP_096067548.1 5017223..5017867(+) (crp) [Pseudomonas aeruginosa strain FDAARGOS_767]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMIHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=324204 FIU18_RS23610 WP_096067548.1 5017223..5017867(+) (crp) [Pseudomonas aeruginosa strain FDAARGOS_767]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGTGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGATCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

66.832

94.393

0.631
  crp Haemophilus influenzae Rd KW20

59.901

94.393

0.565
  crp Acinetobacter baumannii D1279779

55.051

92.523

0.509