Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ECB94_RS07600 Genome accession   NZ_CP033577
Coordinates   1616995..1617627 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio mediterranei strain 117-T6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1611995..1622627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECB94_RS07575 (ECB94_07590) - 1612418..1613014 (-) 597 WP_006074812.1 LysE family translocator -
  ECB94_RS07580 (ECB94_07595) - 1613134..1614522 (+) 1389 WP_124940355.1 PLP-dependent aminotransferase family protein -
  ECB94_RS07585 (ECB94_07600) - 1614519..1615505 (+) 987 WP_006074814.1 hydrolase -
  ECB94_RS07590 (ECB94_07605) - 1615544..1615756 (+) 213 WP_006074815.1 YheU family protein -
  ECB94_RS07595 (ECB94_07610) - 1615882..1616751 (+) 870 WP_006074816.1 phosphoribulokinase -
  ECB94_RS07600 (ECB94_07615) crp 1616995..1617627 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  ECB94_RS07605 (ECB94_07620) - 1617696..1618487 (-) 792 WP_038230938.1 DUF1338 domain-containing protein -
  ECB94_RS07610 (ECB94_07625) astD 1618500..1619957 (-) 1458 WP_124940356.1 succinylglutamate-semialdehyde dehydrogenase -
  ECB94_RS07615 (ECB94_07630) astA 1620054..1621073 (-) 1020 WP_124940357.1 arginine N-succinyltransferase -
  ECB94_RS07620 (ECB94_07635) - 1621147..1622364 (-) 1218 WP_124940358.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=324108 ECB94_RS07600 WP_004410522.1 1616995..1617627(+) (crp) [Vibrio mediterranei strain 117-T6]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=324108 ECB94_RS07600 WP_004410522.1 1616995..1617627(+) (crp) [Vibrio mediterranei strain 117-T6]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACGTTAGAGTGGTTCCTTTCACACTGCCACATTCACAAGTATCCTTCTAA
AAGCACGCTAATCCATGCGGGCGAGAAAGCGGAAACTCTTTACTACATCGTAAAAGGTTCTGTAGCGGTACTGATCAAAG
ATGAAGAAGGCAAAGAGATGATCTTGTCTTACCTTAACCAAGGTGACTTCATTGGTGAACTTGGCTTGTTCGAAGAAGAC
CAAGAACGTACGGCATGGGTACGTGCAAAATCTCCTTGTGAAGTTGCGGAAATCTCATTCAAGAAATTCCGTCAGCTGAT
TCAAGTTAACCCTGATATTCTAATGCGCTTATCTGCTCAAATGGCAAGCCGTCTACAAGTGACTAGCCAAAAAGTAGGTG
ACTTAGCGTTCCTAGACGTAACAGGCCGCATTGCTCAAACGCTACTAAACCTAGCGAAGCAACCAGACGCAATGACTCAC
CCAGATGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGCCAAATTGTTGGCTGTTCACGTGAGACAGTGGGACGCAT
TCTTAAGATGCTAGAAGAGCAGAACCTAATTTCTGCTCACGGTAAGACTATTGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment