Detailed information NTG0324105

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ECB94_RS06900
• Genome accession: NZ_CP033577
• Coordinates: 1491762..1492631 (+)
• Length: 289 a.a.
• NCBI ID: WP_124940291.1
• Uniprot ID: -
• Organism: Vibrio mediterranei strain 117-T6
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1486762..1497631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECB94_RS06880 (ECB94_06890)	nadC	1487180..1488070 (+)	891	WP_124940288.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ECB94_RS06885 (ECB94_06895)	-	1488312..1488791 (+)	480	WP_006074427.1	pilin	-
ECB94_RS06890 (ECB94_06900)	pilB	1488791..1490482 (+)	1692	WP_164491468.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ECB94_RS06895 (ECB94_06905)	pilC	1490493..1491719 (+)	1227	WP_124940290.1	type II secretion system F family protein	Machinery gene
ECB94_RS06900 (ECB94_06910)	pilD	1491762..1492631 (+)	870	WP_124940291.1	prepilin peptidase	Machinery gene
ECB94_RS06905 (ECB94_06915)	coaE	1492634..1493242 (+)	609	WP_006074421.1	dephospho-CoA kinase	-
ECB94_RS06910 (ECB94_06920)	zapD	1493274..1494014 (+)	741	WP_031494891.1	cell division protein ZapD	-
ECB94_RS06915 (ECB94_06925)	yacG	1494036..1494230 (+)	195	WP_006074419.1	DNA gyrase inhibitor YacG	-
ECB94_RS06920 (ECB94_06930)	rplS	1494434..1494787 (-)	354	WP_006074418.1	50S ribosomal protein L19	-
ECB94_RS06925 (ECB94_06935)	trmD	1494830..1495579 (-)	750	WP_038224311.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ECB94_RS06930 (ECB94_06940)	rimM	1495614..1496171 (-)	558	WP_031494889.1	ribosome maturation factor RimM	-
ECB94_RS06935 (ECB94_06945)	rpsP	1496192..1496440 (-)	249	WP_031494887.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32320.61 Da
• Isoelectric Point: 6.9212

>NTDB_id=324105 ECB94_RS06900 WP_124940291.1 1491762..1492631(+) (pilD) [Vibrio mediterranei strain 117-T6]
MDAFSYYPWLFPAFAALFGLIVGSFLNVVIYRLPIMMERGWREECAEAFPEYKIAPPEDKFNLSVPRSACPKCHTPIRII
DNIPVLSWLLLKGKCHHCSHKISARYPLIELLTAAMCATVAWQLGYSEYSLALIVFTFVLIGATFIDFDTMLLPDQLTLP
LMWLGIALALLGISPISLTDSVIGAMAGYLCLWSIFWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPLIVLMSSVVGV
LFGLVQLRMQKKGIDVAFPFGPYLAIAGWISALWGEQLIQYYLTSYIGM

Nucleotide

• Length: 870 bp

>NTDB_id=324105 ECB94_RS06900 WP_124940291.1 1491762..1492631(+) (pilD) [Vibrio mediterranei strain 117-T6]
ATGGACGCATTTTCTTATTATCCTTGGCTCTTCCCTGCTTTTGCGGCTCTCTTCGGCTTGATCGTTGGCAGTTTTTTGAA
TGTCGTCATTTATCGATTACCGATAATGATGGAGCGTGGTTGGCGCGAAGAATGTGCCGAAGCCTTTCCTGAGTACAAAA
TTGCCCCTCCAGAAGATAAATTTAACCTTAGCGTGCCGCGCTCGGCATGCCCTAAATGCCATACACCGATTCGAATTATC
GATAATATTCCTGTACTCAGCTGGTTGTTACTTAAGGGCAAGTGTCATCATTGCAGTCATAAAATCAGTGCTCGTTACCC
ACTTATTGAGCTCCTGACAGCAGCCATGTGTGCAACCGTAGCGTGGCAACTTGGGTATAGTGAATATAGCTTAGCGTTAA
TCGTCTTTACCTTCGTGCTTATCGGTGCCACTTTTATTGACTTCGATACCATGCTGTTGCCAGACCAGCTTACCTTACCT
CTGATGTGGTTAGGCATTGCACTAGCATTATTAGGCATCTCTCCAATTTCGTTGACGGATTCTGTAATTGGTGCCATGGC
TGGCTACCTCTGCTTATGGTCCATTTTCTGGCTGTTTAAACTACTAACAGGTAAAGAGGGCATGGGCTACGGTGACTTTA
AGTTGCTGGCAGCTCTCGGAGCATGGTTAGGCTGGCAACACTTGCCTCTGATCGTCTTAATGTCATCCGTTGTCGGGGTT
TTATTTGGTCTCGTTCAATTGCGAATGCAAAAGAAAGGGATTGATGTTGCATTTCCTTTCGGCCCTTATCTCGCTATTGC
CGGTTGGATTAGCGCATTGTGGGGCGAGCAGCTTATTCAATACTACCTCACGTCGTATATAGGGATGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	72.664	100	0.727
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter nosocomialis M2	51.673	93.08	0.481
pilD	Acinetobacter baumannii D1279779	50.929	93.08	0.474
pilD	Neisseria gonorrhoeae MS11	51.751	88.927	0.46