Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EEB07_RS05170 Genome accession   NZ_CP033576
Coordinates   970857..971501 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain NY12-2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 965857..976501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEB07_RS05135 (EEB07_05135) - 967042..967473 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  EEB07_RS05140 (EEB07_05140) - 967473..967814 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  EEB07_RS05145 (EEB07_05145) - 967807..969288 (+) 1482 WP_123117415.1 Na+/H+ antiporter subunit D -
  EEB07_RS05150 (EEB07_05150) - 969294..969770 (+) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  EEB07_RS05155 (EEB07_05155) - 969770..970054 (+) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  EEB07_RS05160 (EEB07_05160) mnhG 970038..970412 (+) 375 WP_123117416.1 monovalent cation/H(+) antiporter subunit G -
  EEB07_RS05165 (EEB07_05165) - 970452..970835 (-) 384 WP_017419422.1 hotdog fold thioesterase -
  EEB07_RS05170 (EEB07_05170) comA 970857..971501 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  EEB07_RS05175 (EEB07_05175) comP 971582..973888 (-) 2307 WP_123117417.1 sensor histidine kinase Regulator
  EEB07_RS05180 (EEB07_05180) comX 973907..974083 (-) 177 WP_017419424.1 competence pheromone ComX -
  EEB07_RS05185 (EEB07_05185) - 974098..974994 (-) 897 WP_017419425.1 polyprenyl synthetase family protein -
  EEB07_RS05190 (EEB07_05190) degQ 975125..975265 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  EEB07_RS05200 (EEB07_05200) - 975731..976072 (+) 342 WP_025285192.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=324041 EEB07_RS05170 WP_014418762.1 970857..971501(-) (comA) [Bacillus velezensis strain NY12-2]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=324041 EEB07_RS05170 WP_014418762.1 970857..971501(-) (comA) [Bacillus velezensis strain NY12-2]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86

Multiple sequence alignment