Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EEA44_RS00350 Genome accession   NZ_CP033438
Coordinates   81571..82092 (-) Length   173 a.a.
NCBI ID   WP_002829316.1    Uniprot ID   A0AAN5YAY2
Organism   Pediococcus acidilactici strain ATCC 8042     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 76571..87092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEA44_RS00330 dnaB 77190..78587 (-) 1398 WP_002829312.1 replicative DNA helicase -
  EEA44_RS00335 rplI 78637..79089 (-) 453 WP_002830768.1 50S ribosomal protein L9 -
  EEA44_RS00340 - 79095..81092 (-) 1998 WP_002829314.1 DHH family phosphoesterase -
  EEA44_RS00345 rpsR 81305..81541 (-) 237 WP_002829315.1 30S ribosomal protein S18 -
  EEA44_RS00350 ssb 81571..82092 (-) 522 WP_002829316.1 single-stranded DNA-binding protein Machinery gene
  EEA44_RS00355 rpsF 82129..82416 (-) 288 WP_002829317.1 30S ribosomal protein S6 -
  EEA44_RS00360 gyrA 82602..85121 (-) 2520 WP_119178745.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18874.39 Da        Isoelectric Point: 4.6207

>NTDB_id=323727 EEA44_RS00350 WP_002829316.1 81571..82092(-) (ssb) [Pediococcus acidilactici strain ATCC 8042]
MINRAVLVGRLTRDPELRYTSSGAAVVSFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSLLESRSASERRQENEGFNNGQSAPSQSSAGNPFDSGQANNNGAASQPNNSNPNDPFANG
GQSIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=323727 EEA44_RS00350 WP_002829316.1 81571..82092(-) (ssb) [Pediococcus acidilactici strain ATCC 8042]
ATGATTAATCGTGCCGTACTAGTTGGACGTTTAACAAGAGATCCTGAACTACGATATACAAGTAGTGGTGCTGCCGTAGT
TAGTTTTACCGTGGCGGTTAACCGTCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGTGTAATGT
GGCGGAAAGCGGCGGAAAACTTCGCCAACTTCACGCGCAAGGGCTCTCTAGTAGGTATCGACGGTCGGATCCAAACCCGT
TCGTACGAAAACCAACAAGGACAACGAGTATACGTTACCGAAGTTGTTGCGGATAACTTCTCACTTCTTGAATCCCGTTC
GGCTTCCGAACGCCGTCAAGAAAATGAAGGCTTCAACAACGGTCAATCTGCCCCTTCACAATCATCTGCTGGAAATCCTT
TTGACAGTGGTCAAGCGAATAACAATGGTGCTGCATCGCAGCCTAACAATTCGAACCCGAATGATCCGTTTGCAAATGGC
GGACAGTCAATTGATATTTCTGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

69.318

100

0.705
  ssbA Bacillus subtilis subsp. subtilis str. 168

60

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

61.272

0.376

Multiple sequence alignment